Awesome
SAM & SAM 2 for Medical Image Segmentation.
-
Due to the inherent flexibility of prompting, foundation models have emerged as the predominant force in the fields of natural language processing and computer vision. The introduction of the Segment Anything Model (SAM) (paper) and SAM2 (paper) signifies a noteworthy expansion of the prompt-driven paradigm into the domain of image/video segmentation, introducing a plethora of previously unexplored capabilities.
-
We provide a comprehensive survey of recent endeavors aimed at extending the efficacy of SAM to medical image segmentation tasks, encompassing both empirical benchmarking and methodological adaptations. Additionally, we explore potential avenues for future research directions in SAM's role within medical image segmentation. Please refer to the paper for more details.
-
[New!] Following our previous work, we provide a survey (paper) of recent innovations and applications of SAM2 for the segmentation of biomedical images and videos.
-
This repo will continue to track and summarize the latest research progress of SAM & SAM2 in medical image segmentation to support ongoing research endeavors. If you find this project helpful, please consider stars or citing. Feel free to contact for any suggestions. If you would like to contribute, please open an issue.
@article{SAM4MIS,
title={Segment Anything Model for Medical Image Segmentation: Current Applications and Future Directions},
author={Zhang, Yichi and Shen, Zhenrong and Jiao, Rushi},
journal={Computers in Biology and Medicine},
volume={171},
pages={108238},
year={2024}
}
@article{SAM2-MIS,
title={Unleashing the Potential of SAM2 for Biomedical Images and Videos: A Survey},
author={Zhang, Yichi and Shen, Zhenrong},
journal={arXiv preprint arXiv:2408.12889},
year={2024}
}
- Last update 2024-11-03
Table of Contents
- Introduction: About SAM & SAM2
- Literature Reviews of SAM 2 for Medical Image Segmentation
- Literature Reviews of SAM for Medical Image Segmentation
- Large-Scale Datasets for Developing Medical Foundation Models
- CVPR2024 Workshop: Segment Anything in Medical Images on Laptop
About Segment Anything Model (SAM) <div id="introduction"></div>
Segment Anything Model (SAM) uses vision transformer-based image encoder to extract image features and compute an image embedding, and prompt encoder to embed prompts and incorporate user interactions. Then extranted information from two encoders are combined to alightweight mask decoder to generate segmentation results based on the image embedding, prompt embedding, and output token. For more details, please refer to the original paper of SAM.
A brief chronology of Segment Anything Model (SAM) and its variants for medical image segmentation in 2023.
Literature Reviews of SAM 2 Adaptions for Medical Image Segmentation. <div id="sam24mis"></div>
| Date | Authors | Title | Code |
|---|---|---|---|
| 202408 | M. Mansoori et al. | Self-Prompting Polyp Segmentation in Colonoscopy using Hybrid Yolo-SAM 2 Model (paper) | Code |
| 202408 | X. Chen et al. | SAM-OCTA2: Layer Sequence OCTA Segmentation with Fine-tuned Segment Anything Model 2 (paper) | Code |
| 202408 | L. Zhao et al. | Retrieval-augmented Few-shot Medical Image Segmentation with Foundation Models (paper) | None |
| 202408 | Z. Yildiz et al. | SAM & SAM 2 in 3D Slicer: SegmentWithSAM Extension for Annotating Medical Images (paper) | Code |
| 202408 | Y. He et al. | A Short Review and Evaluation of SAM2’s Performance in 3D CT Image Segmentation (paper) | Code |
| 202408 | X. Xiong et al. | SAM2-UNet: Segment Anything 2 Makes Strong Encoder for Natural and Medical Image Segmentation (paper) | Code |
| 202408 | H. Liu et al. | Surgical SAM 2: Real-time Segment Anything in Surgical Video by Efficient Frame Pruning (paper) | Code |
| 202408 | Y. Yamagishi et al. | Zero-shot 3D Segmentation of Abdominal Organs in CT Scans Using Segment Anything Model 2: Adapting Video Tracking Capabilities for 3D Medical Imaging (paper) | None |
| 202408 | M. Mansoori et al. | Polyp SAM 2: Advancing Zero shot Polyp Segmentation in Colorectal Cancer Detection (paper) | Code |
| 202408 | AS. Yu et al. | Novel adaptation of video segmentation to 3D MRI: efficient zero-shot knee segmentation with SAM2 (paper) | None |
| 202408 | J. Yu et al. | SAM 2 in Robotic Surgery: An Empirical Evaluation for Robustness and Generalization in Surgical Video Segmentation (paper) | None |
| 202408 | T. Chen et al. | SAM2-Adapter: Evaluating & Adapting Segment Anything 2 in Downstream Tasks: Camouflage, Shadow, Medical Image Segmentation, and More (paper) | None |
| 202408 | S. Sengupta et al. | Is SAM 2 Better than SAM in Medical Image Segmentation? (paper) | None |
| 202408 | Y. Shen et al. | Performance and Non-adversarial Robustness of the Segment Anything Model 2 in Surgical Video Segmentation (paper) | None |
| 202408 | M. Zhang et al. | SAM2-PATH: A better segment anything model for semantic segmentation in digital pathology (paper) | Code |
| 202408 | J. Ma et al. | Segment Anything in Medical Images and Videos: Benchmark and Deployment (paper) | Code |
| 202408 | Z. Yan et al. | Biomedical SAM 2: Segment Anything in Biomedical Images and Videos (paper) | Code |
| 202408 | C. Shen et al. | Interactive 3D Medical Image Segmentation with SAM 2 (paper) | Code |
| 202408 | A. Lou et al. | Zero-Shot Surgical Tool Segmentation in Monocular Video Using Segment Anything Model 2 (paper) | Code |
| 202408 | J. Zhu et al. | Medical SAM 2: Segment medical images as video via Segment Anything Model 2 (paper) | Code |
| 202408 | H. Dong et al. | Segment anything model 2: an application to 2D and 3D medical images (paper) | None |
Literature Reviews of Foundation Models / SAM for Medical Image Segmentation. <div id="sam4mis"></div>
| Date | Authors | Title | Code |
|---|---|---|---|
| 202410 | X. Ouyang et al. | Towards a general computed tomography image segmentation model for anatomical structures and lesions (paper) | None |
| 202410 | Y. Zhang et al. | SemiSAM: Enhancing Semi-Supervised Medical Image Segmentation via SAM-Assisted Consistency Regularization (paper) | Code |
| 202410 | Y. Li et al. | Plug-and-play segment anything model improves nnUNet performance (paper) | Code |
| 202410 | J. Wei et al. | SAM-Swin: SAM-Driven Dual-Swin Transformers with Adaptive Lesion Enhancement for Laryngo-Pharyngeal Tumor Detection (paper) | Code |
| 202410 | Y. Wen et al. | Generalizing Segmentation Foundation Model Under Sim-to-real Domain-shift for Guidewire Segmentation in X-ray Fluoroscopy (paper) | None |
| 202410 | C. Qin et al. | DB-SAM: Delving into High Quality Universal Medical Image Segmentation (paper) | Code |
| 202410 | Z. Wei et al. | Prompting Segment Anything Model with Domain-Adaptive Prototype for Generalizable Medical Image Segmentation (paper) | Code |
| 202410 | Z. Xu et al. | FM-ABS: Promptable Foundation Model Drives Active Barely Supervised Learning for 3D Medical Image Segmentation (paper) | None |
| 202410 | Y. Liu et al. | FedFMS: Exploring Federated Foundation Models for Medical Image Segmentation (paper) | Code |
| 202410 | F. Lyu et al. | Superpixel-Guided Segment Anything Model for Liver Tumor Segmentation with Couinaud Segment Prompt (paper) | None |
| 202410 | H. Shi et al. | Mask-Enhanced Segment Anything Model for Tumor Lesion Semantic Segmentation (paper) | Code |
| 202410 | Y. Huang et al. | Optimizing Efficiency and Effectiveness in Sequential Prompt Strategy for SAM Using Reinforcement Learning (paper) | None |
| 202410 | W. Li et al. | TP-DRSeg: Improving Diabetic Retinopathy Lesion Segmentation with Explicit Text-Prompts Assisted SAM (paper) | Code |
| 202410 | X. Lin et al. | Beyond Adapting SAM: Towards End-to-End Ultrasound Image Segmentation via Auto Prompting (paper) | Code |
| 202410 | Y. Zhao et al. | CryoSAM: Training-Free CryoET Tomogram Segmentation with Foundation Models (paper) | Code |
| 202410 | Q. Liu et al. | Adapting Segment Anything Model to Melanoma Segmentation in Microscopy Slide Images (paper) | None |
| 202410 | I. Häkkinen et al. | Medical Image Segmentation with SAM-generated Annotations (paper) | None |
| 202409 | M. Gaillochet et al. | Automating MedSAM by Learning Prompts with Weak Few-Shot Supervision (paper) | Code |
| 202409 | T. Koleilat et al. | MedCLIP-SAMv2: Towards Universal Text-Driven Medical Image Segmentation (paper) | Code |
| 202409 | A. Senbi et al. | Towards Ground-truth-free Evaluation of Any Segmentation in Medical Images (paper) | Code |
| 202409 | G. Huang et al. | MCICSAM: Monte Carlo-guided Interpolation Consistency Segment Anything Model for Semi-Supervised Prostate Zone Segmentation (paper) | None |
| 202409 | H. Wang et al. | Tri-Plane Mamba: Efficiently Adapting Segment Anything Model for 3D Medical Images (paper) | Code |
| 202409 | AS. Wahd et al. | Sam2Rad: A Segmentation Model for Medical Images with Learnable Prompts (paper) | Code |
| 202409 | Y. Liu et al. | When 3D Partial Points Meets SAM: Tooth Point Cloud Segmentation with Sparse Labels (paper) | Code |
| 202409 | X. Zheng et al. | Curriculum Prompting Foundation Models for Medical Image Segmentation (paper) | Code |
| 202408 | S. Kato et al. | Generalized SAM: Efficient Fine-Tuning of SAM for Variable Input Image Sizes (paper) | Code |
| 202408 | C. Zhou et al. | SAM-SP: Self-Prompting Makes SAM Great Again (paper) | None |
| 202408 | S. Yang et al. | SAM-UNet: Enhancing Zero-Shot Segmentation of SAM for Universal Medical Images (paper) | Code |
| 202408 | J. Wei et al. | SAM-FNet: SAM-Guided Fusion Network for Laryngo-Pharyngeal Tumor Detection (paper) | Code |
| 202408 | X. Wei et al. | PromptSAM+: Malware Detection based on Prompt Segment Anything Model (paper) | Code |
| 202407 | J. Cai et al. | PESAM: Privacy-Enhanced Segment Anything Model for Medical Image Segmentation (paper) | None |
| 202407 | M. Asokan et al. | A Federated Learning-Friendly Approach for Parameter-Efficient Fine-Tuning of SAM in 3D Segmentation (paper) | Code |
| 202407 | SN. Gowda et al. | CC-SAM: SAM with Cross-feature Attention and Context for Ultrasound Image Segmentation(paper) | None |
| 202407 | X. Huo et al. | Dr-SAM: U-Shape Structure Segment Anything Model for Generalizable Medical Image Segmentation (paper) | None |
| 202407 | H. Fang et al. | SAM-MIL: A Spatial Contextual Aware Multiple Instance Learning Approach for Whole Slide Image Classification (paper) | None |
| 202407 | Q. Xu et al. | ESP-MedSAM: Efficient Self-Prompting SAM for Universal Domain-Generalized Medical Image Segmentation (paper) | Code |
| 202407 | X. Zhao et al. | SAM-Driven Weakly Supervised Nodule Segmentation with Uncertainty-Aware Cross Teaching (paper) | None |
| 202407 | Q. Xu et al. | ProtoSAM: One Shot Medical Image Segmentation With Foundational Models (paper) | Code |
| 202407 | A. Murali et al. | CycleSAM: One-Shot Surgical Scene Segmentation using Cycle-Consistent Feature Matching to Prompt SAM (paper) | None |
| 202407 | T. Song et al. | TinySAM-Med3D: A Lightweight Segment Anything Model for Volumetric Medical Imaging with Mixture of Experts (paper) | None |
| 202407 | Y. Gao et al. | MBA-Net: SAM-driven Bidirectional Aggregation Network for Ovarian Tumor Segmentation (paper) | None |
| 202407 | J. Miao et al. | Cross Prompting Consistency with Segment Anything Model for Semi-supervised Medical Image Segmentation (paper) | Code |
| 202407 | G. Wang et al. | SAM-Med3D-MoE: Towards a Non-Forgetting Segment Anything Model via Mixture of Experts for 3D Medical Image Segmentation (paper) | None |
| 202407 | Z. Zhang et al. | Quantification of cardiac capillarization in basement-membrane-immunostained myocardial slices using Segment Anything Model (paper) | None |
| 202407 | H. Li et al. | ASPS: Augmented Segment Anything Model for Polyp Segmentation (paper) | Code |
| 202406 | Y. Xie et al. | SimTxtSeg: Weakly-Supervised Medical Image Segmentation with Simple Text Cues (paper) | None |
| 202406 | X. Deng et al. | MemSAM: Taming Segment Anything Model for Echocardiography Video Segmentation (paper) | Code |
| 202406 | Yunhe Gao | Training Like a Medical Resident: Context-Prior Learning Toward Universal Medical Image Segmentation (paper) | Code |
| 202406 | C.D Albelda et al. | How SAM Perceives Different mp-MRI Brain Tumor Domains? (paper) | Code |
| 202406 | T. Huang et al. | Improving Segment Anything on the Fly: Auxiliary Online Learning and Adaptive Fusion for Medical Image Segmentation (paper) | Code |
| 202406 | B. Towle et al. | SimSAM: Zero-shot Medical Image Segmentation via Simulated Interaction (paper) | Code |
| 202405 | Y. Gu et al. | LeSAM: Adapt Segment Anything Model for medical lesion segmentation (paper) | None |
| 202405 | J. Leng et al. | Development of UroSAM: A Machine Learning Model to Automatically Identify Kidney Stone Composition from Endoscopic Video (paper) | None |
| 202405 | MM. Rahman et al. | PP-SAM: Perturbed Prompts for Robust Adaptation of Segment Anything Model for Polyp Segmentation (paper) | Code |
| 202405 | X. Zhang et al. | A Foundation Model for Brain Lesion Segmentation with Mixture of Modality Experts (paper) | Code |
| 202405 | TJ. Chan et al. | SAM3D: Zero-Shot Semi-Automatic Segmentation in 3D Medical Images with the Segment Anything Model (paper) | None |
| 202405 | HL. Zedda et al. | SAMMI: Segment Anything Model for Malaria Identification (paper) | None |
| 202404 | H. Zhou et al. | AGSAM: Agent-Guided Segment Anything Model for Automatic Segmentation in Few-Shot Scenarios (paper) | None |
| 202404 | V. Zohranyan et al. | Dr-SAM: An End-to-End Framework for Vascular Segmentation, Diameter Estimation, and Anomaly Detection on Angiography Images (paper) | Code |
| 202404 | Z. Tu et al. | Ultrasound SAM Adapter: Adapting SAM for Breast Lesion Segmentation in Ultrasound Images (paper) | Code |
| 202404 | Y. Sheng et al. | Surgical-DeSAM: Decoupling SAM for Instrument Segmentation in Robotic Surgery (paper) | None |
| 202404 | J. Yu et al. | Adapting SAM for Surgical Instrument Tracking and Segmentation in Endoscopic Submucosal Dissection Videos (paper) | None |
| 202404 | H. Gu et al. | How to build the best medical image segmentation algorithm using foundation models: a comprehensive empirical study with Segment Anything Model (paper) | Code |
| 202404 | W. Abebe et al. | SAM-I-Am: Semantic Boosting for Zero-shot Atomic-Scale Electron Micrograph Segmentation (paper) | None |
| 202404 | S. Aleem et al. | Test-Time Adaptation with SaLIP: A Cascade of SAM and CLIP for Zero-shot Medical Image Segmentation (paper) | Code |
| 202404 | Z. Su et al. | Adapting SAM to histopathology images for tumor bud segmentation in colorectal cancer (paper) | None |
| 202404 | Y. Ding et al. | Barely-supervised Brain Tumor Segmentation via Employing Segment Anything Model (paper) | None |
| 202404 | Y. Zhu et al. | SAM-Att: A Prompt-free SAM-related Model with an Attention Module for Automatic Segmentation of the Left Ventricle in Echocardiography (paper) | None |
| 202404 | Y. Liu et al. | Universal 3D CT lesion segmentation using SAM with RECIST annotation (paper) | None |
| 202403 | Z. Cheng et al. | Unleashing the Potential of SAM for Medical Adaptation via Hierarchical Decoding (paper) | Code |
| 202403 | Y. Liu et al. | Segment Any Medical Model Extended (paper) | None |
| 202403 | P. Kulkarni et al. | Anytime, Anywhere, Anyone: Investigating the Feasibility of Segment Anything Model for Crowd-Sourcing Medical Image Annotations (paper) | None |
| 202403 | H. Guo et al. | Towards a Comprehensive, Efficient and Promptable Anatomic Structure Segmentation Model using 3D Whole-body CT Scans (paper) | None |
| 202403 | S. Li et al. | Concatenate, Fine-tuning, Re-training: A SAM-enabled Framework for Semi-supervised 3D Medical Image Segmentation (paper) | Code |
| 202403 | M. Jiang et al. | Uncertainty-Aware Adapter: Adapting Segment Anything Model (SAM) for Ambiguous Medical Image Segmentation (paper) | None |
| 202403 | Z. Chen et al. | Cardiac Magnetic Resonance 2D+T Short- and Long-axis Segmentation via Spatio-temporal SAM Adaptation (paper) | None |
| 202403 | Y. Shen et al. | FastSAM3D: An Efficient Segment Anything Model for 3D Volumetric Medical Images (paper) | Code |
| 202403 | H. Liu et al. | WSI-SAM: Multi-resolution Segment Anything Model (SAM) for histopathology whole-slide images (paper) | Code |
| 202403 | YX. Teoh et al. | Segmentation of Knee Bones for Osteoarthritis Assessment: A Comparative Analysis of Supervised, Few-Shot, and Zero-Shot Learning Approaches (paper) | None |
| 202403 | Y. Wang et al. | SAMDA: Leveraging SAM on Few-Shot Domain Adaptation for Electronic Microscopy Segmentation (paper) | None |
| 202403 | Y. Liu et al. | FedFMS: Exploring Federated Foundation Models for Medical Image Segmentation (paper) | Code |
| 202403 | C. Zhao et al. | Part-aware Personalized Segment Anything Model for Patient-Specific Segmentation (paper) | None |
| 202403 | J. Wang et al. | ProMISe: Promptable Medical Image Segmentation using SAM (paper) | None |
| 202402 | L. Zhang et al. | BLO-SAM: Bi-Level Optimization Based Finetuning of the Segment Anything Model for Overfitting-Preventing Semantic Segmentation (paper) | Code |
| 202402 | KJ. Oguine et al. | From Generalization to Precision: Exploring SAM for Tool Segmentation in Surgical Environments (paper) | None |
| 202402 | J. Ren et al. | Segment anything model for head and neck tumor segmentation with CT, PET and MRI multi-modality images (paper) | None |
| 202402 | Z. Chen et al. | UN-SAM: Universal Prompt-Free Segmentation for Generalized Nuclei Images (paper) | Code |
| 202402 | H. Wu et al. | Tumor segmentation on whole slide images: training or prompting? (paper) | None |
| 202402 | P. Farmanifard et al. | Iris-SAM: Iris Segmentation Using a Foundational Model (paper) | None |
| 202402 | A. Guo et al. | ClickSAM: Fine-tuning Segment Anything Model using click prompts for ultrasound image segmentation (paper) | None |
| 202401 | J. Wan et al. | TriSAM: Tri-Plane SAM for zero-shot cortical blood vessel segmentation in VEM images (paper) | None |
| 202401 | S. Na et al. | Segment Any Cell: A SAM-based Auto-prompting Fine-tuning Framework for Nuclei Segmentation (paper) | None |
| 202401 | H. Gu et al. | SegmentAnyBone: A Universal Model that Segments Any Bone at Any Location on MRI (paper) | Code |
| 202401 | S. Li et al. | ClipSAM: CLIP and SAM Collaboration for Zero-Shot Anomaly Segmentation (paper) | Code |
| 202401 | JD. Gutiérrez et al. | No More Training: SAM's Zero-Shot Transfer Capabilities for Cost-Efficient Medical Image Segmentation(paper) | None |
| 202401 | H. Wang et al. | Leveraging SAM for Single-Source Domain Generalization in Medical Image Segmentation (paper) | Code |
| 202401 | Z. Feng et al. | Swinsam: Fine-Grained Polyp Segmentation in Colonoscopy Images Via Segment Anything Model Integrated with a Swin Transformer Decoder (paper) | None |
| 202312 | Z. Zhao et al. | One Model to Rule them All: Towards Universal Segmentation for Medical Images with Text Prompts (paper) | Code |
| 202312 | W. Yue et al. | Part to Whole: Collaborative Prompting for Surgical Instrument Segmentation (paper) | Code |
| 202312 | ZM. Colbert et al. | Repurposing Traditional U-Net Predictions for Sparse SAM Prompting in Medical Image Segmentation (paper) | None |
| 202312 | W. Xie et al. | SAM Fewshot Finetuning for Anatomical Segmentation in Medical Images (paper) | None |
| 202312 | JG. Almeida et al. | Testing the Segment Anything Model on radiology data (paper) | None |
| 202312 | M. Barakat et al. | Towards SAMBA: Segment Anything Model for Brain Tumor Segmentation in Sub-Sharan African Populations (paper) | None |
| 202312 | Y. Zhang et al. | SQA-SAM: Segmentation Quality Assessment for Medical Images Utilizing the Segment Anything Model (paper) | Code |
| 202312 | S. Chen et al. | ASLseg: Adapting SAM in the Loop for Semi-supervised Liver Tumor Segmentation (paper) | None |
| 202312 | HE. Wong et al. | ScribblePrompt: Fast and Flexible Interactive Segmentation for Any Medical Image (paper) | Code |
| 202312 | Y. Zhang et al. | SemiSAM: Exploring SAM for Enhancing Semi-Supervised Medical Image Segmentation with Extremely Limited Annotations (paper) | |
| 202312 | Y. Zhao et al. | Segment Anything Model-guided Collaborative Learning Network for Scribble-supervised Polyp Segmentation (paper) | None |
| 202311 | N. Li et al. | Segment Anything Model for Semi-Supervised Medical Image Segmentation via Selecting Reliable Pseudo-Labels (paper) | None |
| 202311 | X. Wei et al. | I-MedSAM: Implicit Medical Image Segmentation with Segment Anything (paper) | None |
| 202311 | Z. Shui et al. | Unleashing the Power of Prompt-driven Nucleus Instance Segmentation (paper) | Code |
| 202311 | M. Li and G. Yang et al. | Where to Begin? From Random to Foundation Model Instructed Initialization in Federated Learning for Medical Image Segmentation (paper) | None |
| 202311 | AK. Tyagi et al. | Guided Prompting in SAM for Weakly Supervised Cell Segmentation in Histopathological Images (paper) | Code |
| 202311 | Y. Du et al. | SegVol: Universal and Interactive Volumetric Medical Image Segmentation (paper) | Code |
| 202311 | DM. Nguyen et al. | On the Out of Distribution Robustness of Foundation Models in Medical Image Segmentation (paper) | None |
| 202311 | U. Israel et al. | A Foundation Model for Cell Segmentation (paper) | Code |
| 202311 | Q. Quan et al. | Slide-SAM: Medical SAM Meets Sliding Window (paper) | None |
| 202311 | Y. Zhang et al. | Segment Anything Model with Uncertainty Rectification for Auto-Prompting Medical Image Segmentation (paper) | Code |
| 202311 | Y. Wang et al. | SAMIHS: Adaptation of Segment Anything Model for Intracranial Hemorrhage Segmentation (paper) | Code |
| 202311 | H. Jiang et al. | GlanceSeg: Real-time microangioma lesion segmentation with gaze map-guided foundation model for early detection of diabetic retinopathy (paper) | None |
| 202311 | Y. Xu et al. | EviPrompt: A Training-Free Evidential Prompt Generation Method for Segment Anything Model in Medical Images (paper) | None |
| 202311 | DL. Ferreira and R. Arnaout | Are foundation models efficient for medical image segmentation? (paper) | Code |
| 202310 | H. Li et al. | Promise:Prompt-driven 3D Medical Image Segmentation Using Pretrained Image Foundation Models (paper) | Code |
| 202310 | D. Anand et al. | One-shot Localization and Segmentation of Medical Images with Foundation Models (paper) | None |
| 202310 | H. Wang et al. | SAM-Med3D (paper) | Code |
| 202310 | SK. Kim et al. | Evaluation and improvement of Segment Anything Model for interactive histopathology image segmentation (paper) | Code |
| 202310 | X. Chen et al. | SAM-OCTA: Prompting Segment-Anything for OCTA Image Segmentation (paper) | Code |
| 202310 | M. Peivandi et al. | Empirical Evaluation of the Segment Anything Model (SAM) for Brain Tumor Segmentation (paper) | None |
| 202310 | H. Ravishankar et al. | SonoSAM - Segment Anything on Ultrasound Images (paper) | None |
| 202310 | A. Ranem et al. | Exploring SAM Ablations for Enhancing Medical Segmentation in Radiology and Pathology (paper) | None |
| 202310 | S. Pandey et al. | Comprehensive Multimodal Segmentation in Medical Imaging: Combining YOLOv8 with SAM and HQ-SAM Models (paper) | None |
| 202309 | Y. Li et al. | nnSAM: Plug-and-play Segment Anything Model Improves nnUNet Performance (paper) | Code |
| 202309 | Y. Zhao et al. | MFS Enhanced SAM: Achieving Superior Performance in Bimodal Few-shot Segmentation (paper) | Code |
| 202309 | C. Wang et al. | SAM-OCTA: A Fine-Tuning Strategy for Applying Foundation Model to OCTA Image Segmentation Tasks (paper) | Code |
| 202309 | Y. Zhang et al. | 3D-U-SAM Network For Few-shot Tooth Segmentation in CBCT Images (paper) | None |
| 202309 | CJ. Chao et al. | Comparative Eminence: Foundation versus Domain-Specific Model for Cardiac Ultrasound Segmentation (paper) | None |
| 202309 | H. Ning et al. | An Accurate and Efficient Neural Network for OCTA Vessel Segmentation and a New Dataset (paper) | Code |
| 202309 | C. Chen et al. | MA-SAM: Modality-agnostic SAM Adaptation for 3D Medical Image Segmentation (paper) | Code |
| 202309 | P. Zhang and Y. Wang | Segment Anything Model for Brain Tumor Segmentation (paper) | None |
| 202309 | B. Fazekas et al. | Adapting Segment Anything Model (SAM) for Retinal OCT (paper) | None |
| 202309 | X. Lin et al. | SAMUS: Adapting Segment Anything Model for Clinically-Friendly and Generalizable Ultrasound Image Segmentation (paper) | Code |
| 202309 | X. Xing et al. | SegmentAnything helps microscopy images based automatic and quantitative organoid detection and analysis (paper) | Code |
| 202309 | NT. Bui et al. | SAM3D: Segment Anything Model in Volumetric Medical Images (paper) | Code |
| 202308 | Y. Zhang et al. | Self-Sampling Meta SAM: Enhancing Few-shot Medical Image Segmentation with Meta-Learning (paper) | None |
| 202308 | J. Cheng et al. | SAM-Med2D (paper) | Code |
| 202308 | C. Li et al. | Auto-Prompting SAM for Mobile Friendly 3D Medical Image Segmentation (paper) | None |
| 202308 | W. Feng et al. | Cheap Lunch for Medical Image Segmentation by Fine-tuning SAM on Few Exemplars (paper) | None |
| 202308 | Y. Zhang et al. | SamDSK: Combining Segment Anything Model with Domain-Specific Knowledge for Semi-Supervised Learning in Medical Image Segmentation (paper) | None |
| 202308 | A. Lou et al. | SAMSNeRF: Segment Anything Model (SAM) Guides Dynamic Surgical Scene Reconstruction by Neural Radiance Field (NeRF) (paper) | Code |
| 202308 | A. Archit et al. | Segment Anything for Microscopy (paper) | Code |
| 202308 | X. Yao et al. | False Negative/Positive Control for SAM on Noisy Medical Images (paper) | Code |
| 202308 | B. Fazekas et al. | SAMedOCT: Adapting Segment Anything Model (SAM) for Retinal OCT (paper) | None |
| 202308 | W. Yue et al. | SurgicalSAM: Efficient Class Promptable Surgical Instrument Segmentation (paper) | Code |
| 202308 | H. Zhang et al. | CARE: A Large Scale CT Image Dataset and Clinical Applicable Benchmark Model for Rectal Cancer Segmentation (paper) | Code |
| 202308 | Q. Wu et al. | Self-Prompting Large Vision Models for Few-Shot Medical Image Segmentation (paper) | Code |
| 202308 | A. Wang et al. | SAM Meets Robotic Surgery: An Empirical Study on Generalization, Robustness and Adaptation (paper) | None |
| 202308 | D. Shin et al. | CEmb-SAM: Segment Anything Model with Condition Embedding for Joint Learning from Heterogeneous Datasets (paper) | None |
| 202308 | R. Biswas | Polyp-SAM++: Can A Text Guided SAM Perform Better for Polyp Segmentation? (paper) | Code |
| 202308 | S. Cao et al. | TongueSAM: An Universal Tongue Segmentation Model Based on SAM with Zero-Shot (paper) | Code |
| 202308 | X. Li et al. | Leverage Weakly Annotation to Pixel-wise Annotation via Zero-shot Segment Anything Model for Molecular-empowered Learning (paper) | None |
| 202308 | JN. Paranjape et al. | AdaptiveSAM: Towards Efficient Tuning of SAM for Surgical Scene Segmentation (paper) | Code |
| 202308 | Z. Huang et al. | Push the Boundary of SAM: A Pseudo-label Correction Framework for Medical Segmentation (paper) | None |
| 202307 | J. Zhang et al. | SAM-Path: A Segment Anything Model for Semantic Segmentation in Digital Pathology (paper) | Code |
| 202307 | MS. Hossain et al. | Robust HER2 Grading of Breast Cancer Patients using Zero-shot Segment Anything Model (SAM) (paper) | None |
| 202307 | C. Wang et al. | SAM^Med^ : A medical image annotation framework based on large vision model (paper) | None |
| 202307 | G. Deng et al. | SAM-U: Multi-box prompts triggered uncertainty estimation for reliable SAM in medical image (paper) | None |
| 202307 | H. Kim et al. | Empirical Analysis of a Segmentation Foundation Model in Prostate Imaging (paper) | None |
| 202307 | X. Shi et al. | Cross-modality Attention Adapter: A Glioma Segmentation Fine-tuning Method for SAM Using Multimodal Brain MR Images (paper) | None |
| 202307 | C. Cui et al. | All-in-SAM: from Weak Annotation to Pixel-wise Nuclei Segmentation with Prompt-based Finetuning (paper) | None |
| 202306 | E. Kellener et al. | Utilizing Segment Anything Model for Assessing Localization of Grad-CAM in Medical Imaging (paper) | None |
| 202306 | F. Hörst et al. | CellViT: Vision Transformers for Precise Cell Segmentation and Classification (paper) | Code |
| 202306 | W. Lei et al. | MedLSAM: Localize and Segment Anything Model for 3D Medical Images (paper) | Code |
| 202306 | X. Hu et al. | How to Efficiently Adapt Large Segmentation Model (SAM) to Medical Images (paper) | Code |
| 202306 | S. Gong et al. | 3DSAM-adapter: Holistic Adaptation of SAM from 2D to 3D for Promptable Medical Image Segmentation (paper) | Code |
| 202306 | DMH. Nguyen et al. | LVM-Med: Learning Large-Scale Self-Supervised Vision Models for Medical Imaging via Second-order Graph Matching (paper) | Code |
| 202306 | S. Chai et al. | Ladder Fine-tuning approach for SAM integrating complementary network (paper) | Code |
| 202306 | L. Zhang et al. | Segment Anything Model (SAM) for Radiation Oncology (paper) | None |
| 202306 | G. Ning et al. | The potential of 'Segment Anything' (SAM) for universal intelligent ultrasound image guidance (paper) | None |
| 202306 | C. Shen et al. | Temporally-Extended Prompts Optimization for SAM in Interactive Medical Image Segmentation (paper) | None |
| 202306 | T. Shaharabany et al. | AutoSAM: Adapting SAM to Medical Images by Overloading the Prompt Encoder (paper) | None |
| 202306 | Y. Gao et al. | DeSAM: Decoupling Segment Anything Model for Generalizable Medical Image Segmentation (paper) | Code |
| 202305 | D. Lee et al. | IAMSAM : Image-based Analysis of Molecular signatures using the Segment-Anything Model (paper) | Code |
| 202305 | M. Hu et al. | BreastSAM: A Study of Segment Anything Model for Breast Tumor Detection in Ultrasound Images (paper) | None |
| 202305 | J. Wu | PromptUNet: Toward Interactive Medical Image Segmentation (paper) | Code |
| 202305 | Y. Li et al. | Polyp-SAM: Transfer SAM for Polyp Segmentation (paper) | Code |
| 202305 | C. Mattjie et al. | Exploring the Zero-Shot Capabilities of the Segment Anything Model (SAM) in 2D Medical Imaging: A Comprehensive Evaluation and Practical Guideline (paper) | None |
| 202305 | D. Cheng et al. | SAM on Medical Images: A Comprehensive Study on Three Prompt Modes (paper) | None |
| 202304 | A. Wang et al. | SAM Meets Robotic Surgery: An Empirical Study in Robustness Perspective (paper) | None |
| 202304 | Y. Huang et al. | Segment Anything Model for Medical Images? (paper) | None |
| 202304 | M. Hu et al. | SkinSAM: Empowering Skin Cancer Segmentation with Segment Anything Model (paper) | None |
| 202304 | B. Wang et al. | GazeSAM: What You See is What You Segment (paper) | Code |
| 202304 | K. Zhang and D. Liu | Customized Segment Anything Model for Medical Image Segmentation (paper) | Code |
| 202304 | Z. Qiu et al. | Learnable Ophthalmology SAM (paper) | Code |
| 202304 | P. Shi et al. | Generalist Vision Foundation Models for Medical Imaging: A Case Study of Segment Anything Model on Zero-Shot Medical Segmentation (paper) | None |
| 202304 | J. Wu et al. | Medical SAM Adapter: Adapting Segment Anything Model for Medical Image Segmentation (paper) | Code |
| 202304 | J. Ma and B. Wang | Segment Anything in Medical Images (paper) | Code |
| 202304 | Y. Zhang et al. | Input Augmentation with SAM: Boosting Medical Image Segmentation with Segmentation Foundation Model (paper) | None |
| 202304 | MA. Mazurowski et al. | Segment Anything Model for Medical Image Analysis: an Experimental Study (paper) | Code |
| 202304 | S. He et al. | Accuracy of Segment-Anything Model (SAM) in medical image segmentation tasks (paper) | None |
| 202304 | T. Chen et al. | SAM Fails to Segment Anything? – SAM-Adapter: Adapting SAM in Underperformed Scenes: Camouflage, Shadow, Medical Image Segmentation, and More (paper) | Code |
| 202304 | C. Hu and X. Li | When SAM Meets Medical Images: An Investigation of Segment Anything Model (SAM) on Multi-phase Liver Tumor Segmentation (paper) | None |
| 202304 | F. Putz et al. | The “Segment Anything” foundation model achieves favorable brain tumor autosegmentation accuracy on MRI to support radiotherapy treatment planning (paper) | None |
| 202304 | T. Zhou et al. | Can SAM Segment Polyps? (paper) | Code |
| 202304 | Y. Liu et al. | SAMM (Segment Any Medical Model): A 3D Slicer Integration to SAM (paper) | Code |
| 202304 | S. Roy et al. | SAM.MD: Zero-shot medical image segmentation capabilities of the Segment Anything Model (paper) | None |
| 202304 | S. Mohapatra et al. | SAM vs BET: A Comparative Study for Brain Extraction and Segmentation of Magnetic Resonance Images using Deep Learning (paper) | None |
| 202304 | R. Deng et al. | Segment Anything Model (SAM) for Digital Pathology: Assess Zero-shot Segmentation on Whole Slide Imaging (paper) | None |
Large-Scale Datasets for Developing Medical Foundation Models.<div id="dataset"></div>
| Date | Authors | Title | Dataset |
|---|---|---|---|
| 202404 | F. Bai et al. | M3D: Advancing 3D Medical Image Analysis with Multi-Modal Large Language Models (paper) | Link |
| 202311 | J. Ye et al. | SA-Med2D-20M Dataset: Segment Anything in 2D Medical Imaging with 20 Million masks (paper) | Link |
CVPR2024 Workshop: Segment Anything in Medical Images on Laptop.<div id="cvpr24"></div>
The field of medical image segmentation is currently experiencing a paradigm shift, moving from specialized models designed for individual tasks to foundation models capable of managing a multitude of segmentation scenarios. This challenge seeks universal promptable medical image segmentation models that are deployable on laptops or other edge devices without reliance on GPUs.