Home

Awesome

sleuth paper analysis

This repo contains all of the code to reproduce the results in the sleuth paper.

The repository at https://github.com/pachterlab/sleuth_paper_analysis should always have an updated version that is hopefully bug free.

Preliminaries

Organization

The code is organized into a few different directories, each with a theme:

R dependencies

Install using install.packages()

from CRAN

from Bioconductor

First, install Bioconductor:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")

Then, you should be able to install packages using the biocLite() function.

from GitHub

Bug reports

Please make them in GitHub issues.