Awesome
tabulator-py
A library for reading and writing tabular data (csv/xls/json/etc).
[Important Notice] We have released Frictionless Framework. This framework is logical continuation of
tabulator
that was extended to be a complete data solution. The change in not breaking for the existing software so no actions are required. Please read the Migration Guide fromtabulator
to Frictionless Framework.
- we continue to bug-fix
tabulator@1.x
in this repository as well as it's available on PyPi as it was before- please note that
frictionless@3.x
version's API, we're working on at the moment, is not stable- we will release
frictionless@4.x
by the end of 2020 to be the first SemVer/stable version
Features
- Supports most common tabular formats: CSV, XLS, ODS, JSON, Google Sheets, SQL, and others. See complete list below.
- Loads local and remote data: Supports HTTP, FTP and S3.
- Low memory usage: Only the current row is kept in memory, so you can large datasets.
- Supports compressed files: Using ZIP or GZIP algorithms.
- Extensible: You can add support for custom file formats and loaders (e.g. FTP).
Contents
<!--TOC--> <!--TOC-->Getting started
Installation
$ pip install tabulator
Running on CLI
Tabulator ships with a simple CLI called tabulator
to read tabular data. For
example:
$ tabulator https://github.com/frictionlessdata/tabulator-py/raw/4c1b3943ac98be87b551d87a777d0f7ca4904701/data/table.csv.gz
id,name
1,english
2,中国人
You can see all supported options by running tabulator --help
.
Running on Python
from tabulator import Stream
with Stream('data.csv', headers=1) as stream:
stream.headers # [header1, header2, ..]
for row in stream:
print(row) # [value1, value2, ..]
You can find other examples in the examples directory.
Documentation
In the following sections, we'll walk through some usage examples of this library. All examples were tested with Python 3.6, but should run fine with Python 3.3+.
Working with Stream
The Stream
class represents a tabular stream. It takes the file path as the
source
argument. For example:
<scheme>://path/to/file.<format>
It uses this path to determine the file format (e.g. CSV or XLS) and scheme
(e.g. HTTP or postgresql). It also supports format extraction from URLs like http://example.com?format=csv
. If necessary, you also can define these explicitly.
Let's try it out. First, we create a Stream
object passing the path to a CSV file.
import tabulator
stream = tabulator.Stream('data.csv')
At this point, the file haven't been read yet. Let's open the stream so we can read the contents.
try:
stream.open()
except tabulator.TabulatorException as e:
pass # Handle exception
This will open the underlying data stream, read a small sample to detect the
file encoding, and prepare the data to be read. We catch
tabulator.TabulatorException
here, in case something goes wrong.
We can now read the file contents. To iterate over each row, we do:
for row in stream.iter():
print(row) # [value1, value2, ...]
The stream.iter()
method will return each row data as a list of values. If
you prefer, you could call stream.iter(keyed=True)
instead, which returns a
dictionary with the column names as keys. Either way, this method keeps only a
single row in memory at a time. This means it can handle handle large files
without consuming too much memory.
If you want to read the entire file, use stream.read()
. It accepts the same
arguments as stream.iter()
, but returns all rows at once.
stream.reset()
rows = stream.read()
Notice that we called stream.reset()
before reading the rows. This is because
internally, tabulator only keeps a pointer to its current location in the file.
If we didn't reset this pointer, we would read starting from where we stopped.
For example, if we ran stream.read()
again, we would get an empty list, as
the internal file pointer is at the end of the file (because we've already read
it all). Depending on the file location, it might be necessary to download the
file again to rewind (e.g. when the file was loaded from the web).
After we're done, close the stream with:
stream.close()
The entire example looks like:
import tabulator
stream = tabulator.Stream('data.csv')
try:
stream.open()
except tabulator.TabulatorException as e:
pass # Handle exception
for row in stream.iter():
print(row) # [value1, value2, ...]
stream.reset() # Rewind internal file pointer
rows = stream.read()
stream.close()
It could be rewritten to use Python's context manager interface as:
import tabulator
try:
with tabulator.Stream('data.csv') as stream:
for row in stream.iter():
print(row)
stream.reset()
rows = stream.read()
except tabulator.TabulatorException as e:
pass
This is the preferred way, as Python closes the stream automatically, even if some exception was thrown along the way.
The full API documentation is available as docstrings in the Stream source code.
Headers
By default, tabulator considers that all file rows are values (i.e. there is no header).
with Stream([['name', 'age'], ['Alex', 21]]) as stream:
stream.headers # None
stream.read() # [['name', 'age'], ['Alex', 21]]
If you have a header row, you can use the headers
argument with the its row
number (starting from 1).
# Integer
with Stream([['name', 'age'], ['Alex', 21]], headers=1) as stream:
stream.headers # ['name', 'age']
stream.read() # [['Alex', 21]]
You can also pass a lists of strings to define the headers explicitly:
with Stream([['Alex', 21]], headers=['name', 'age']) as stream:
stream.headers # ['name', 'age']
stream.read() # [['Alex', 21]]
Tabulator also supports multiline headers for the xls
and xlsx
formats.
with Stream('data.xlsx', headers=[1, 3], fill_merged_cells=True) as stream:
stream.headers # ['header from row 1-3']
stream.read() # [['value1', 'value2', 'value3']]
Encoding
You can specify the file encoding (e.g. utf-8
and latin1
) via the encoding
argument.
with Stream(source, encoding='latin1') as stream:
stream.read()
If this argument isn't set, Tabulator will try to infer it from the data. If you
get a UnicodeDecodeError
while loading a file, try setting the encoding to
utf-8
.
Compression (Python3-only)
Tabulator supports both ZIP and GZIP compression methods. By default it'll infer from the file name:
with Stream('http://example.com/data.csv.zip') as stream:
stream.read()
You can also set it explicitly:
with Stream('data.csv.ext', compression='gz') as stream:
stream.read()
Options
- filename: filename in zip file to process (default is first file)
Allow html
The Stream
class raises tabulator.exceptions.FormatError
if it detects HTML
contents. This helps avoiding the relatively common mistake of trying to load a
CSV file inside an HTML page, for example on GitHub.
You can disable this behaviour using the allow_html
option:
with Stream(source_with_html, allow_html=True) as stream:
stream.read() # no exception on open
Sample size
To detect the file's headers, and run other checks like validating that the file
doesn't contain HTML, Tabulator reads a sample of rows on the stream.open()
method. This data is available via the stream.sample
property. The number of
rows used can be defined via the sample_size
parameters (defaults to 100).
with Stream(two_rows_source, sample_size=1) as stream:
stream.sample # only first row
stream.read() # first and second rows
You can disable this by setting sample_size
to zero. This way, no data will be
read on stream.open()
.
Bytes sample size
Tabulator needs to read a part of the file to infer its encoding. The
bytes_sample_size
arguments controls how many bytes will be read for this
detection (defaults to 10000).
source = 'data/special/latin1.csv'
with Stream(source) as stream:
stream.encoding # 'iso8859-2'
You can disable this by setting bytes_sample_size
to zero, in which case it'll
use the machine locale's default encoding.
Ignore blank headers
When True
, tabulator will ignore columns that have blank headers (defaults to
False
).
# Default behaviour
source = 'text://header1,,header3\nvalue1,value2,value3'
with Stream(source, format='csv', headers=1) as stream:
stream.headers # ['header1', '', 'header3']
stream.read(keyed=True) # {'header1': 'value1', '': 'value2', 'header3': 'value3'}
# Ignoring columns with blank headers
source = 'text://header1,,header3\nvalue1,value2,value3'
with Stream(source, format='csv', headers=1, ignore_blank_headers=True) as stream:
stream.headers # ['header1', 'header3']
stream.read(keyed=True) # {'header1': 'value1', 'header3': 'value3'}
Ignore listed/not-listed headers
The option is similar to the ignore_blank_headers
. It removes arbitrary columns from the data based on the corresponding column names:
# Ignore listed headers (omit columns)
source = 'text://header1,header2,header3\nvalue1,value2,value3'
with Stream(source, format='csv', headers=1, ignore_listed_headers=['header2']) as stream:
assert stream.headers == ['header1', 'header3']
assert stream.read(keyed=True) == [
{'header1': 'value1', 'header3': 'value3'},
]
# Ignore NOT listed headers (pick colums)
source = 'text://header1,header2,header3\nvalue1,value2,value3'
with Stream(source, format='csv', headers=1, ignore_not_listed_headers=['header2']) as stream:
assert stream.headers == ['header2']
assert stream.read(keyed=True) == [
{'header2': 'value2'},
]
Force strings
When True
, all rows' values will be converted to strings (defaults to
False
). None
values will be converted to empty strings.
# Default behaviour
with Stream([['string', 1, datetime.datetime(2017, 12, 1, 17, 00)]]) as stream:
stream.read() # [['string', 1, datetime.dateime(2017, 12, 1, 17, 00)]]
# Forcing rows' values as strings
with Stream([['string', 1]], force_strings=True) as stream:
stream.read() # [['string', '1', '2017-12-01 17:00:00']]
Force parse
When True
, don't raise an exception when parsing a malformed row, but simply
return an empty row. Otherwise, tabulator raises
tabulator.exceptions.SourceError
when a row can't be parsed. Defaults to False
.
# Default behaviour
with Stream([[1], 'bad', [3]]) as stream:
stream.read() # raises tabulator.exceptions.SourceError
# With force_parse
with Stream([[1], 'bad', [3]], force_parse=True) as stream:
stream.read() # [[1], [], [3]]
Skip rows
List of row numbers and/or strings to skip. If it's a string, all rows that begin with it will be skipped (e.g. '#' and '//'). If it's the empty string, all rows that begin with an empty column will be skipped.
source = [['John', 1], ['Alex', 2], ['#Sam', 3], ['Mike', 4], ['John', 5]]
with Stream(source, skip_rows=[1, 2, -1, '#']) as stream:
stream.read() # [['Mike', 4]]
If the headers
parameter is also set to be an integer, it will use the first not skipped row as a headers.
source = [['#comment'], ['name', 'order'], ['John', 1], ['Alex', 2]]
with Stream(source, headers=1, skip_rows=['#']) as stream:
stream.headers # [['name', 'order']]
stream.read() # [['Jogn', 1], ['Alex', 2]]
Post parse
List of functions that can filter or transform rows after they are parsed. These
functions receive the extended_rows
containing the row's number, headers
list, and the row values list. They then process the rows, and yield or discard
them, modified or not.
def skip_odd_rows(extended_rows):
for row_number, headers, row in extended_rows:
if not row_number % 2:
yield (row_number, headers, row)
def multiply_by_two(extended_rows):
for row_number, headers, row in extended_rows:
doubled_row = list(map(lambda value: value * 2, row))
yield (row_number, headers, doubled_row)
rows = [
[1],
[2],
[3],
[4],
]
with Stream(rows, post_parse=[skip_odd_rows, multiply_by_two]) as stream:
stream.read() # [[4], [8]]
These functions are applied in order, as a simple data pipeline. In the example
above, multiply_by_two
just sees the rows yielded by skip_odd_rows
.
Keyed and extended rows
The methods stream.iter()
and stream.read()
accept the keyed
and
extended
flag arguments to modify how the rows are returned.
By default, every row is returned as a list of its cells values:
with Stream([['name', 'age'], ['Alex', 21]]) as stream:
stream.read() # [['Alex', 21]]
With keyed=True
, the rows are returned as dictionaries, mapping the column names to their values in the row:
with Stream([['name', 'age'], ['Alex', 21]]) as stream:
stream.read(keyed=True) # [{'name': 'Alex', 'age': 21}]
And with extended=True
, the rows are returned as a tuple of (row_number, headers, row)
, there row_number
is the current row number (starting from 1),
headers
is a list with the headers names, and row
is a list with the rows
values:
with Stream([['name', 'age'], ['Alex', 21]]) as stream:
stream.read(extended=True) # (1, ['name', 'age'], ['Alex', 21])
Supported schemes
s3
It loads data from AWS S3. For private files you should provide credentials supported by the boto3
library, for example, corresponding environment variables. Read more about configuring boto3
.
stream = Stream('s3://bucket/data.csv')
Options
- s3_endpoint_url - the endpoint URL to use. By default it's
https://s3.amazonaws.com
. For complex use cases, for example,goodtables
's runs on a data package this option can be provided as an environment variableS3_ENDPOINT_URL
.
file
The default scheme, a file in the local filesystem.
stream = Stream('data.csv')
http/https/ftp/ftps
In Python 2,
tabulator
can't stream remote data sources because of a limitation in the underlying libraries. The whole data source will be loaded to the memory. In Python 3 there is no such problem and remote files are streamed.
stream = Stream('https://example.com/data.csv')
Options
- http_session - a
requests.Session
object. Read more in the requests docs. - http_stream - Enables or disables HTTP streaming, when possible (enabled by default). Disable it if you'd like to preload the whole file into memory.
- http_timeout - This timeout will be used for a
requests
session construction.
stream
The source is a file-like Python object.
with open('data.csv') as fp:
stream = Stream(fp)
text
The source is a string containing the tabular data. Both scheme
and format
must be set explicitly, as it's not possible to infer them.
stream = Stream(
'name,age\nJohn, 21\n',
scheme='text',
format='csv'
)
Supported file formats
In this section, we'll describe the supported file formats, and their respective configuration options and operations. Some formats only support read operations, while others support both reading and writing.
csv (read & write)
stream = Stream('data.csv', delimiter=',')
Options
It supports all options from the Python CSV library. Check their documentation for more information.
xls/xlsx (read & write)
Tabulator is unable to stream
xls
files, so the entire file is loaded in memory. Streaming is supported forxlsx
files.
stream = Stream('data.xls', sheet=1)
Options
- sheet: Sheet name or number (starting from 1).
- workbook_cache: An empty dictionary to handle workbook caching. If provided,
tabulator
will fill the dictionary withsource: tmpfile_path
pairs for remote workbooks. Each workbook will be downloaded only once and all the temporary files will be deleted on the process exit. Defauts: None - fill_merged_cells: if
True
it will unmerge and fill all merged cells by a visible value. With this option enabled the parser can't stream data and load the whole document into memory. - preserve_formatting: if
True
it will try to preserve text formatting of numeric and temporal cells returning it as strings according to how it looks in a spreadsheet (EXPERIMETAL) - adjust_floating_point_error: if
True
it will correct the Excel behaviour regarding floating point numbers
ods (read only)
This format is not included to package by default. To use it please install
tabulator
with anods
extras:$ pip install tabulator[ods]
Source should be a valid Open Office document.
stream = Stream('data.ods', sheet=1)
Options
- sheet: Sheet name or number (starting from 1)
gsheet (read only)
A publicly-accessible Google Spreadsheet.
stream = Stream('https://docs.google.com/spreadsheets/d/<id>?usp=sharing')
stream = Stream('https://docs.google.com/spreadsheets/d/<id>edit#gid=<gid>')
sql (read & write)
Any database URL supported by sqlalchemy.
stream = Stream('postgresql://name:pass@host:5432/database', table='data')
Options
- table (required): Database table name
- order_by: SQL expression for row ordering (e.g.
name DESC
)
Data Package (read only)
This format is not included to package by default. You can enable it by installing tabulator using
pip install tabulator[datapackage]
.
stream = Stream('datapackage.json', resource=1)
Options
- resource: Resource name or index (starting from 0)
inline (read only)
Either a list of lists, or a list of dicts mapping the column names to their respective values.
stream = Stream([['name', 'age'], ['John', 21], ['Alex', 33]])
stream = Stream([{'name': 'John', 'age': 21}, {'name': 'Alex', 'age': 33}])
json (read & write)
JSON document containing a list of lists, or a list of dicts mapping the column
names to their respective values (see the inline
format for an example).
stream = Stream('data.json', property='key1.key2')
Options
- property: JSON Path to the property containing the tabular data. For example, considering the JSON
{"response": {"data": [...]}}
, theproperty
should be set toresponse.data
. - keyed (write): Save as array of arrays (default) or as array of dicts (keyed).
ndjson (read only)
stream = Stream('data.ndjson')
tsv (read only)
stream = Stream('data.tsv')
html (read only)
This format is not included to package by default. To use it please install
tabulator
with thehtml
extra:$ pip install tabulator[html]
An HTML table element residing inside an HTML document.
Supports simple tables (no merged cells) with any legal combination of the td, th, tbody & thead elements.
Usually foramt='html'
would need to be specified explicitly as web URLs don't always use the .html
extension.
stream = Stream('http://example.com/some/page.aspx', format='html' selector='.content .data table#id1', raw_html=True)
Options
-
selector: CSS selector for specifying which
table
element to extract. By default it'stable
, which takes the firsttable
element in the document. If empty, will assume the entire page is the table to be extracted (useful with some Excel formats). -
raw_html: False (default) to extract the textual contents of each cell. True to return the inner html without modification.
Custom file sources and formats
Tabulator is written with extensibility in mind, allowing you to add support for new tabular file formats, schemes (e.g. ssh), and writers (e.g. MongoDB). There are three components that allow this:
- Loaders
- Loads a stream from some location (e.g. ssh)
- Parsers
- Parses a stream of tabular data in some format (e.g. xls)
- Writers
- Writes tabular data to some destination (e.g. MongoDB)
In this section, we'll see how to write custom classes to extend any of these components.
Custom loaders
You can add support for a new scheme (e.g. ssh) by creating a custom loader.
Custom loaders are implemented by inheriting from the Loader
class, and
implementing its methods. This loader can then be used by Stream
to load data
by passing it via the custom_loaders={'scheme': CustomLoader}
argument.
The skeleton of a custom loader looks like:
from tabulator import Loader
class CustomLoader(Loader):
options = []
def __init__(self, bytes_sample_size, **options):
pass
def load(self, source, mode='t', encoding=None):
# load logic
with Stream(source, custom_loaders={'custom': CustomLoader}) as stream:
stream.read()
You can see examples of how the loaders are implemented by looking in the
tabulator.loaders
module.
Custom parsers
You can add support for a new file format by creating a custom parser. Similarly
to custom loaders, custom parsers are implemented by inheriting from the
Parser
class, and implementing its methods. This parser can then be used by
Stream
to parse data by passing it via the custom_parsers={'format': CustomParser}
argument.
The skeleton of a custom parser looks like:
from tabulator import Parser
class CustomParser(Parser):
options = []
def __init__(self, loader, force_parse, **options):
self.__loader = loader
def open(self, source, encoding=None):
# open logic
def close(self):
# close logic
def reset(self):
# reset logic
@property
def closed(self):
return False
@property
def extended_rows(self):
# extended rows logic
with Stream(source, custom_parsers={'custom': CustomParser}) as stream:
stream.read()
You can see examples of how parsers are implemented by looking in the
tabulator.parsers
module.
Custom writers
You can add support to write files in a specific format by creating a custom
writer. The custom writers are implemented by inheriting from the base Writer
class, and implementing its methods. This writer can then be used by Stream
to
write data via the custom_writers={'format': CustomWriter}
argument.
The skeleton of a custom writer looks like:
from tabulator import Writer
class CustomWriter(Writer):
options = []
def __init__(self, **options):
pass
def write(self, source, target, headers=None, encoding=None):
# write logic
with Stream(source, custom_writers={'custom': CustomWriter}) as stream:
stream.save(target)
You can see examples of how parsers are implemented by looking in the
tabulator.writers
module.
API Reference
cli
cli(source, limit, **options)
Command-line interface
Usage: tabulator [OPTIONS] SOURCE
Options:
--headers INTEGER
--scheme TEXT
--format TEXT
--encoding TEXT
--limit INTEGER
--sheet TEXT/INTEGER (excel)
--fill-merged-cells BOOLEAN (excel)
--preserve-formatting BOOLEAN (excel)
--adjust-floating-point-error BOOLEAN (excel)
--table TEXT (sql)
--order_by TEXT (sql)
--resource TEXT/INTEGER (datapackage)
--property TEXT (json)
--keyed BOOLEAN (json)
--version Show the version and exit.
--help Show this message and exit.
Stream
Stream(self,
source,
headers=None,
scheme=None,
format=None,
encoding=None,
compression=None,
allow_html=False,
sample_size=100,
bytes_sample_size=10000,
ignore_blank_headers=False,
ignore_listed_headers=None,
ignore_not_listed_headers=None,
multiline_headers_joiner=' ',
multiline_headers_duplicates=False,
force_strings=False,
force_parse=False,
pick_rows=None,
skip_rows=None,
pick_fields=None,
skip_fields=None,
pick_columns=None,
skip_columns=None,
post_parse=[],
custom_loaders={},
custom_parsers={},
custom_writers={},
**options)
Stream of tabular data.
This is the main tabulator
class. It loads a data source, and allows you
to stream its parsed contents.
Arguments
source (str):
Path to file as ``<scheme>://path/to/file.<format>``.
If not explicitly set, the scheme (file, http, ...) and
format (csv, xls, ...) are inferred from the source string.
headers (Union[int, List[int], List[str]], optional):
Either a row
number or list of row numbers (in case of multi-line headers) to be
considered as headers (rows start counting at 1), or the actual
headers defined a list of strings. If not set, all rows will be
treated as containing values.
scheme (str, optional):
Scheme for loading the file (file, http, ...).
If not set, it'll be inferred from `source`.
format (str, optional):
File source's format (csv, xls, ...). If not
set, it'll be inferred from `source`. inferred
encoding (str, optional):
Source encoding. If not set, it'll be inferred.
compression (str, optional):
Source file compression (zip, ...). If not set, it'll be inferred.
pick_rows (List[Union[int, str, dict]], optional):
The same as `skip_rows` but it's for picking rows instead of skipping.
skip_rows (List[Union[int, str, dict]], optional):
List of row numbers, strings and regex patterns as dicts to skip.
If a string, it'll skip rows that their first cells begin with it e.g. '#' and '//'.
To skip only completely blank rows use `{'type': 'preset', 'value': 'blank'}`
To provide a regex pattern use `{'type': 'regex', 'value': '^#'}`
For example: `skip_rows=[1, '# comment', {'type': 'regex', 'value': '^# (regex|comment)'}]`
pick_fields (str[]):
When passed, ignores all columns with headers
that the given list DOES NOT include
skip_fields (str[]):
When passed, ignores all columns with headers
that the given list includes. If it contains an empty string it will skip
empty headers
sample_size (int, optional):
Controls the number of sample rows used to
infer properties from the data (headers, encoding, etc.). Set to
``0`` to disable sampling, in which case nothing will be inferred
from the data. Defaults to ``config.DEFAULT_SAMPLE_SIZE``.
bytes_sample_size (int, optional):
Same as `sample_size`, but instead
of number of rows, controls number of bytes. Defaults to
``config.DEFAULT_BYTES_SAMPLE_SIZE``.
allow_html (bool, optional):
Allow the file source to be an HTML page.
If False, raises ``exceptions.FormatError`` if the loaded file is
an HTML page. Defaults to False.
multiline_headers_joiner (str, optional):
When passed, it's used to join multiline headers
as `<passed-value>.join(header1_1, header1_2)`
Defaults to ' ' (space).
multiline_headers_duplicates (bool, optional):
By default tabulator will exclude a cell of a miltilne header from joining
if it's exactly the same as the previous seen value in this field.
Enabling this option will force duplicates inclusion
Defaults to False.
force_strings (bool, optional):
When True, casts all data to strings.
Defaults to False.
force_parse (bool, optional):
When True, don't raise exceptions when
parsing malformed rows, simply returning an empty value. Defaults
to False.
post_parse (List[function], optional):
List of generator functions that
receives a list of rows and headers, processes them, and yields
them (or not). Useful to pre-process the data. Defaults to None.
custom_loaders (dict, optional):
Dictionary with keys as scheme names,
and values as their respective ``Loader`` class implementations.
Defaults to None.
custom_parsers (dict, optional):
Dictionary with keys as format names,
and values as their respective ``Parser`` class implementations.
Defaults to None.
custom_loaders (dict, optional):
Dictionary with keys as writer format
names, and values as their respective ``Writer`` class
implementations. Defaults to None.
**options (Any, optional): Extra options passed to the loaders and parsers.
stream.closed
Returns True if the underlying stream is closed, False otherwise.
Returns
bool
: whether closed
stream.compression
Stream's compression ("no" if no compression)
Returns
str
: compression
stream.encoding
Stream's encoding
Returns
str
: encoding
stream.format
Path's format
Returns
str
: format
stream.fragment
Path's fragment
Returns
str
: fragment
stream.hash
Returns the SHA256 hash of the read chunks if available
Returns
str/None
: SHA256 hash
stream.headers
Headers
Returns
str[]/None
: headers if available
stream.sample
Returns the stream's rows used as sample.
These sample rows are used internally to infer characteristics of the source file (e.g. encoding, headers, ...).
Returns
list[]
: sample
stream.scheme
Path's scheme
Returns
str
: scheme
stream.size
Returns the BYTE count of the read chunks if available
Returns
int/None
: BYTE count
stream.source
Source
Returns
any
: stream source
stream.open
stream.open()
Opens the stream for reading.
Raises:
TabulatorException: if an error
stream.close
stream.close()
Closes the stream.
stream.reset
stream.reset()
Resets the stream pointer to the beginning of the file.
stream.iter
stream.iter(keyed=False, extended=False)
Iterate over the rows.
Each row is returned in a format that depends on the arguments keyed
and extended
. By default, each row is returned as list of their
values.
Arguments
- keyed (bool, optional):
When True, each returned row will be a
dict
mapping the header name to its value in the current row. For example,[{'name': 'J Smith', 'value': '10'}]
. Ignored ifextended
is True. Defaults to False. - extended (bool, optional):
When True, returns each row as a tuple
with row number (starts at 1), list of headers, and list of row
values. For example,
(1, ['name', 'value'], ['J Smith', '10'])
. Defaults to False.
Raises
exceptions.TabulatorException
: If the stream is closed.
Returns
Iterator[Union[List[Any], Dict[str, Any], Tuple[int, List[str], List[Any]]]]
:
The row itself. The format depends on the values of keyed
and
extended
arguments.
stream.read
stream.read(keyed=False, extended=False, limit=None)
Returns a list of rows.
Arguments
- keyed (bool, optional): See :func:
Stream.iter
. - extended (bool, optional): See :func:
Stream.iter
. - limit (int, optional): Number of rows to return. If None, returns all rows. Defaults to None.
Returns
List[Union[List[Any], Dict[str, Any], Tuple[int, List[str], List[Any]]]]
:
The list of rows. The format depends on the values of keyed
and extended
arguments.
stream.save
stream.save(target, format=None, encoding=None, **options)
Save stream to the local filesystem.
Arguments
- target (str): Path where to save the stream.
- format (str, optional):
The format the stream will be saved as. If
None, detects from the
target
path. Defaults to None. - encoding (str, optional):
Saved file encoding. Defaults to
config.DEFAULT_ENCODING
. - **options: Extra options passed to the writer.
Returns
count (int?)
: Written rows count if available
Building index...
Started generating documentation...
Loader
Loader(self, bytes_sample_size, **options)
Abstract class implemented by the data loaders
The loaders inherit and implement this class' methods to add support for a new scheme (e.g. ssh).
Arguments
- bytes_sample_size (int): Sample size in bytes
- **options (dict): Loader options
loader.options
loader.load
loader.load(source, mode='t', encoding=None)
Load source file.
Arguments
- source (str): Path to tabular source file.
- mode (str, optional):
Text stream mode,
t
(text) orb
(binary). Defaults tot
. - encoding (str, optional): Source encoding. Auto-detect by default.
Returns
Union[TextIO, BinaryIO]
: I/O stream opened either as text or binary.
Parser
Parser(self, loader, force_parse, **options)
Abstract class implemented by the data parsers.
The parsers inherit and implement this class' methods to add support for a new file type.
Arguments
- loader (tabulator.Loader): Loader instance to read the file.
- force_parse (bool):
When
True
, the parser yields an empty extended row tuple(row_number, None, [])
when there is an error parsing a row. Otherwise, it stops the iteration by raising the exceptiontabulator.exceptions.SourceError
. - **options (dict): Loader options
parser.closed
Flag telling if the parser is closed.
Returns
bool
: whether closed
parser.encoding
Encoding
Returns
str
: encoding
parser.extended_rows
Returns extended rows iterator.
The extended rows are tuples containing (row_number, headers, row)
,
Raises
SourceError
: Ifforce_parse
isFalse
and a row can't be parsed, this exception will be raised. Otherwise, an empty extended row is returned (i.e.(row_number, None, [])
).
Returns:
Iterator[Tuple[int, List[str], List[Any]]]:
Extended rows containing
(row_number, headers, row)
, where headers
is a list of the
header names (can be None
), and row
is a list of row
values.
parser.options
parser.open
parser.open(source, encoding=None)
Open underlying file stream in the beginning of the file.
The parser gets a byte or text stream from the tabulator.Loader
instance and start emitting items.
Arguments
- source (str): Path to source table.
- encoding (str, optional): Source encoding. Auto-detect by default.
Returns
None
parser.close
parser.close()
Closes underlying file stream.
parser.reset
parser.reset()
Resets underlying stream and current items list.
After reset()
is called, iterating over the items will start from the beginning.
Writer
Writer(self, **options)
Abstract class implemented by the data writers.
The writers inherit and implement this class' methods to add support for a new file destination.
Arguments
- **options (dict): Writer options.
writer.options
writer.write
writer.write(source, target, headers, encoding=None)
Writes source data to target.
Arguments
- source (str): Source data.
- target (str): Write target.
- headers (List[str]): List of header names.
- encoding (str, optional): Source file encoding.
Returns
count (int?)
: Written rows count if available
validate
validate(source, scheme=None, format=None)
Check if tabulator is able to load the source.
Arguments
- source (Union[str, IO]): The source path or IO object.
- scheme (str, optional): The source scheme. Auto-detect by default.
- format (str, optional): The source file format. Auto-detect by default.
Raises
SchemeError
: The file scheme is not supported.FormatError
: The file format is not supported.
Returns
bool
: Whether tabulator is able to load the source file.
TabulatorException
TabulatorException()
Base class for all tabulator exceptions.
SourceError
SourceError()
The source file could not be parsed correctly.
SchemeError
SchemeError()
The file scheme is not supported.
FormatError
FormatError()
The file format is unsupported or invalid.
EncodingError
EncodingError()
Encoding error
CompressionError
CompressionError()
Compression error
IOError
IOError()
Local loading error
LoadingError
LoadingError()
Local loading error
HTTPError
HTTPError()
Remote loading error
Contributing
The project follows the Open Knowledge International coding standards.
Recommended way to get started is to create and activate a project virtual environment. To install package and development dependencies into active environment:
$ make install
To run tests with linting and coverage:
$ make test
To run tests without Internet:
$ pytest -m 'not remote
Changelog
Here described only breaking and the most important changes. The full changelog and documentation for all released versions could be found in nicely formatted commit history.
v1.53
- Add support for raw_html extraction in html parser (#341)
v1.52
- Published stream.dialect (works only for csv, for now)
v1.51
- Added experimental table discovery options
v1.50
- Ensure that headers is always a list of strings
v1.49
- Added
workbook_cache
argument for XLSX formats
v1.48
- Published
stream.hashing_algorithm
property
v1.47
- Added
hashing_algorithm
parameter
v1.46
- Fixed multiline headers merging
- Introduced a
multiline_headers_duplicates
flag
v1.45
- HTML format: adds support for empty selector (#321)
v1.44
- Exposed
stream.compression
v1.43
- Exposed
stream.source
v1.42
- Exposed format option to the CLI
v1.41
- Implemented a
pick_rows
parameter (opposite toskip_rows
)
v1.40
- Implemented
stream.save()
returning count of written rows
v1.39
- Implemented JSON writer (#311)
v1.38
- Use
chardet
for encoding detection by default. Forcchardet
:pip install tabulator[cchardet]
. Due to a great deal of problems caused byccharted
for non-Linux/Conda installations we're returning back to usingchardet
by default.
v1.37
- Raise IOError/HTTPError even a not-existent file has a bad format (#304)
v1.36
- Implemented
blank
preset forskip_rows
(#302)
v1.35
- Added
skip/pick_columns
aliases for (#293)
v1.34
- Added
multiline_headers_joiner
argument (#291)
v1.33
- Added support for regex patterns in
skip_rows
(#290)
v1.32
- Added ability to skip columns (#293)
v1.31
- Added
xlsx
writer - Added
html
reader
v1.30
- Added
adjust_floating_point_error
parameter to thexlsx
parser
v1.29
- Implemented the
stream.size
andstream.hash
properties
v1.28
- Added SQL writer
v1.27
- Added
http_timeout
argument for thehttp/https
format
v1.26
- Added
stream.fragment
field showing e.g. Excel sheet's or DP resource's name
v1.25
- Added support for the
s3
file scheme (data loading from AWS S3)
v1.24
- Added support for compressed file-like objects
v1.23
- Added a setter for the
stream.headers
property
v1.22
- The
headers
parameter will now use the first not skipped row if theskip_rows
parameter is provided and there are comments on the top of a data source (see #264)
v1.21
- Implemented experimental
preserve_formatting
for xlsx
v1.20
- Added support for specifying filename in zip source
v1.19
Updated behaviour:
- For
ods
format the boolean, integer and datetime native types are detected now
v1.18
Updated behaviour:
- For
xls
format the boolean, integer and datetime native types are detected now
v1.17
Updated behaviour:
- Added support for Python 3.7
v1.16
New API added:
skip_rows
support for an empty string to skip rows with an empty first column
v1.15
New API added:
- Format will be extracted from URLs like
http://example.com?format=csv
v1.14
Updated behaviour:
- Now
xls
booleans will be parsed as booleans not integers
v1.13
New API added:
- The
skip_rows
argument now supports negative numbers to skip rows starting from the end
v1.12
Updated behaviour:
- Instead of raising an exception, a
UserWarning
warning will be emitted if an option isn't recognized.
v1.11
New API added:
- Added
http_session
argument for thehttp/https
format (it usesrequests
now) - Added support for multiline headers:
headers
argument accept ranges like[1,3]
v1.10
New API added:
- Added support for compressed files i.e.
zip
andgz
on Python3 - The
Stream
constructor now accepts acompression
argument - The
http/https
scheme now accepts ahttp_stream
flag
v1.9
Improved behaviour:
- The
headers
argument allows to set the order for keyed sources and cherry-pick values
v1.8
New API added:
- Formats
XLS/XLSX/ODS
supports sheet names passed via thesheet
argument - The
Stream
constructor accepts anignore_blank_headers
option
v1.7
Improved behaviour:
- Rebased
datapackage
format ondatapackage@1
library
v1.6
New API added:
- Argument
source
for theStream
constructor can be apathlib.Path
v1.5
New API added:
- Argument
bytes_sample_size
for theStream
constructor
v1.4
Improved behaviour:
- Updated encoding name to a canonical form
v1.3
New API added:
stream.scheme
stream.format
stream.encoding
Promoted provisional API to stable API:
Loader
(custom loaders)Parser
(custom parsers)Writer
(custom writers)validate
v1.2
Improved behaviour:
- Autodetect common CSV delimiters
v1.1
New API added:
- Added
fill_merged_cells
option toxls/xlsx
formats
v1.0
New API added:
- published
Loader/Parser/Writer
API - Added
Stream
argumentforce_strings
- Added
Stream
argumentforce_parse
- Added
Stream
argumentcustom_writers
Deprecated API removal:
- removed
topen
andTable
- useStream
instead - removed
Stream
argumentsloader/parser_options
- use**options
instead
Provisional API changed:
- Updated the
Loader/Parser/Writer
API - please use an updated version
v0.15
Provisional API added:
- Unofficial support for
Stream
argumentscustom_loaders/parsers