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UniteM

UniteM is a software toolkit implementing different ensemble binning strategies for producing a non-redundant set of bins from the output of multiple binning methods.

Major version history

1.1.0: UniteM updated to include HMMs from closely related protein families to ensure accurate annotation of marker genes
>=1.0.0: removed CheckM; genome quality estimated using marker genes identified across GTDB species representatives using Prodigal and HMMER; see UniteM manual for details
<1.0.0: used CheckM and CheckM marker sets to evaluate the quality of genomes during ensembly binning; used in the draft UniteM manuscript

Installation

> pip install unitem

Quick Start

The functionality provided by UniteM can be accessed through the help menu:

> unitem -h

Usage information about specific functions can also be accessed through the help menu, e.g.:

> unitem bin –h

Detailed information regarding the use of UniteM can be found in the User's Guide (unitem_manual.pdf).

Cite

If you find this package useful, please cite this git repository (https://github.com/dparks1134/UniteM)