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This dataset contains the GM12878 and HEK293T single-cell ATAC-seq data analyzed in the SCRAT paper. The aligned bam files (aligned to hg19) can be found in SCRAT_example_data_bam folder and the summarized features can be found in SCRAT_summarized_features_GM12878_HEK293T.txt.

The SCRAT user manual can be found