Awesome
napari-trackastra
A napari plugin for cell tracking with trackastra
.
Installation
-
Please install napari as outlined here.
-
After that, install the latest version of this plugin from PyPI with:
pip install napari-trackastra
Notes:
- For tracking with an integer linear program (ILP, which is optional), follow the installation instructions of the main
trackastra
package. - On Windows currently only supported for Python 3.10.
Usage
trackastra
expects a timeseries of raw images and corresponding segmentations masks as input.- We provide some demo data at
File > Open Sample > trackastra
. - Tracked cells can be directly saved to Cell Tracking Challenge format.
- Results can be drag-and-dropped back into napari for inspection.