Awesome

cxr-baselines

Baselines for generating radiology reports on the MIMIC-CXR chest x-ray dataset.

Use

$ ssh -L 8095:localhost:8095 night    # for various values of 8095 

$ cd /scratch/wboag/2019/cxr/cxr-baselines

$ . venv/bin/activate

$ ipython notebook --no-browser --port=8095


Overview

    build_similarities_matrix.ipynb 
        - load the image embeddings, and create img_id -> [img_id] top-100 nearest neighbors
        - /crimea/wboag/2019/cxr/camera_ready_top100.pkl