Awesome

HandleGraph paper

This paper describes a number of succinct, dynamic variation graph implementations and their common API and data model.

To build (on Ubuntu 20.04 or similar), you'll need texlive and its extras:

sudo apt install texlive texlive-latex-extra

Then make will build the paper main.pdf in the root directory.

analysis

The repository includes results from computational experiments on a number of HandleGraph implementations.

There are a few analyses based based on linear regression that compare the different implementations. A number of log/log scaled plots illustrate performance of the various methods for construction, loading, and graph iteration versus graph size.

To generate them, run:

cd analysis
./run.sh

The panels of figure 2 are among those that this script produces. A final concatenated PDF includes both the regressions and the plots.