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babette_example_8

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A babette example.

Example #8: Strict clock with a known clock rate

posterior <- bbt_run(
  "my_alignment.fas",
  clock_model = create_strict_clock_model(
    clock_rate_param = create_clock_rate_param(value = 0.5)
  ) 
)

Thanks to Paul van Els and Yacine Ben Chehida for this use case.

All other parameters are set to their defaults, as in BEAUti.

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babette_example_8

Example #8: Strict clock with a known clock rate

Result