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babette_example_7

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A babette example.

Example #7: HKY site model with a non-zero proportion of invariants

posterior <- bbt_run(
  "my_alignment.fas",
  site_model = create_hky_site_model(
    gamma_site_model = create_gamma_site_model(prop_invariant = 0.5)
  )
)

Thanks to Yacine Ben Chehida for this use case

Result