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C. elegans Tintori et al. single cell data for VisCello

Data from Tintori, et al., 2016

Prepared for VisCello by Qin Zhu

Online version

Link: https://cello.shinyapps.io/celegans_Tintori/

Bugs you found with the online tool please post to https://github.com/qinzhu/VisCello.

Usage

1. Install VisCello from https://github.com/qinzhu/VisCello

2. Git clone this data folder to local.

3. In R:

library(VisCello)
cello("~/Downloads/Celegans.Tintori.Cello") # Change path if necessary

See also:

• C. elegans embryogenesis data and tool: https://github.com/qinzhu/VisCello.celegans

• C. elegans L2 data: https://github.com/qinzhu/Celegans.L2.Cello

Cite VisCello

Packer, J.S., Zhu, Q., Huynh, C., Sivaramakrishnan, P., Preston, E., Dueck, H., Stefanik, D., Tan, K., Trapnell, C., Kim, J. and Waterston, R.H., 2019. A lineage-resolved molecular atlas of C. elegans embryogenesis at single cell resolution. BioRxiv, p.565549.

Cite Data

Tintori, S. C., Nishimura, E. O., Golden, P., Lieb, J. D., & Goldstein, B. (2016). A transcriptional lineage of the early C. elegans embryo. Developmental cell, 38(4), 430-444.