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bistro: build and run distributed workflows

bistro is an OCaml library to build and run computations represented by a collection of interdependent scripts, as is often found in applied research (especially computational biology).

Features:

The library provides a datatype to represent scripts (including metadata and dependencies), an engine to run workflows and a standard library providing components for popular tools (although mostly related to computational biology and unix for now).

Questions, suggestions or contributions are welcome, please file an issue as needed.

Documentation

A manual is available, but feel free to file issues if something is unclear or missing. There is also a generated API documentation.

Installation

Detailed instructions are available in the manual. In a nutshell, bistro can be installed using opam. You need a recent (at least 4.03.0) installation of OCaml. Once this is done, simply type

opam install bistro

to install the library, or:

opam pin add -y bistro --dev-repo

to get the current development version.