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sdmTMBextra
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sdmTMBextra is an R package with extra utilities for working with sdmTMB models. Functionality includes:
- Sampling with MCMC using rstan/tmbstan
- Spatial correlation barriers with SPDE meshes based on utilities from INLA
The package was developed to reduce heavier package dependencies within the main sdmTMB package.
Installation
You can install sdmTMBextra with:
# install.packages("remotes")
remotes::install_github("pbs-assess/sdmTMBextra", dependencies = TRUE)
See the examples within the help files and the main sdmTMB vignettes (under 'Articles').
Always load the sdmTMBextra package after sdmTMB