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ONT-MAP - an OWL2 ontology to ontology data mapper (builder and inference engine).

Summary

ONT-MAP provides a convenient way to build a mapping between two OWL2 ontologies and also an inference-engine to transfer and transform the ontological data in accordance with that mapping and OWL2 schemas. The mapping can be serialized as a SPIN-rules RDF file, and, therefore, is Topbraid Composer compatible.

Motivation

Pure SPIN, which is an RDF-superstructure over SPARQL, is a fairly complex language when it comes to mapping between ontologies, and it is incompatible with OWL-centric systems like OWL-API. ONT-MAP offers a way for building mappings without any knowledge about SPIN or SPARQL, just only through top-level operations and objects, which can be represented as some high-level pseudo-language, that is optimized for GUI developing.

Dependencies

• ONT-API the OWL-API implementation on top of Jena
• Topbraid SHACL, ver 1.0.1 the last public version that supports SPIN
• Jena-ARQ, ver 3.x transitively from ONT-API
• OWL-API, ver 5.1.x transitively from ONT-API

License

• Apache License Version 2.0

Notes, propositions and examples

• com.github.owlcs.map.Managers is the main class to access to the system.

• An important element of the system is the ru.avicom.map.MapFunction interface, which wraps a SPIN function and is used to map and filter ontology data. It supports varargs and its call can contain an unlimited number of nested calls thus representing a function-chain, and therefore seriously extends functionality.

• The API provides access only to those spin functions which acceptable with OWL2 model in mapping terms, all other are hidden or rejected. Some examples of common reasons to exclude/hide a spin-function:

  • if it interacts with some system resources external to the API (e.g. smf:lastModified - function to get the file timestamp).
  • if it is a part of SPARQL that accepts an iterator (e.g. sp:notExists is operator-function to use in SPARQL filter). The API does not allow explicit SPARQL queries as functional parameters.
  • if it is already implicitly used by the API, but explicitly violates its constraints (e.g. spinmap:targetResource is used implicitly to bind several contexts and to create target individuals, in order to control behaviour it is prohibited to use explicitly).
  • if it is not clear how to handle the function and whether it is worth it (e.g. spl:primaryKeyURIStart - a part of a complex and turbid SPIN-API mechanisms, right now I do not see any possibility and necessity to use that functionality. A provided set of functions must be enough to express any mapping between two (or less, or more) OWL2 ontologies with a reasonable schema and data).
  • if it is a property function (i.e. spin:MagicProperties). They are allowed only as part of other MapFunctions.
  • etc.

• In addition to the standard spin functions (from spif, spinmap, fn and other builtin spin vocabularies) there are also ONT-MAP specific functions (such as avc:UUID, avc:currentIndividual, etc), math functions (math:log10, math:atan2) and other. So, a set of functions that can be used while mapping, has been expanded from one side and narrowed with another. But there is no need to to have ONT-MAP libraries for the mapping-instruction to work in Composer - all needs are already delivered in the mapping graph itself.

• ONT-MAP is a pluggable system: a set of functions can be expanded by adding extensions. There is an example of such an extension: ont-map-ext-factorial.

• All functions (i.e. MapFunctions) are supplemented with the complete information about arguments and types to be used as elements of constructor in GUI, any inappropriate usage (e.g. incompatible types) causes an error.

• API can work only with OWL2 entities: the context arrow connects two OWL Class Expressions, to make contexts references OWL Object Property is used, and to map data (make a property bridge in Diagram) OWL Annotation Property and OWL Datatype Property are used.

• The mapping inference engine creates OWL Named Individuals. Although, anonymous individuals are theoretically possible, currently they are not supported due to SPIN-API limitations related to the target functions.

• There is also a com.github.owlcs.map.ClassPropertyMap, that is responsible to provide class-properties hierarchical relations, which can be used to draw class-boxes with all related properties.

• A simple mapping example with inference:

    // get the manager:
    MapManager manager = Managers.createMapManager();
    // get built-in prefixes:
    PrefixMapping pm = manager.prefixes();
    // get some target-function: 
    MapFunction changeNamespace = manager.getFunction(pm.expandPrefix("spinmapl:changeNamespace"));
    // get the source class from the source schema ontology:
    OntCE sourceClass = source.getOntEntity(OntClass.class, ...);
    // get the target class from the target schema ontology:
    OntCE targetClass = target.getOntEntity(OntClass.class, ...);
    // build target function-call:
    String arg = pm.expandPrefix("spinmapl:targetNamespace");
    MapFunction.Call call = changeNamespace.create().add(arg, "http://example.com#").build();
    // create a mappin-model:
    MapModel mapping = manager.createMapModel();
    // build simple map-context:
    mapping.createContext(sourceClass, targetClass, call);
    // run spin-inference:
    manager.getInferenceEngine(mapping).run(source, target);
    
  

• A runnable example can be found on ONT-API wiki: https://github.com/owlcs/ont-api/wiki/Examples#ex9

• Printing all supported functions:

    MapManager manager = Managers.createMapManager();
    manager.functions()
            .sorted(Comparator.comparing((MapFunction f) -> !f.isTarget())
            .thenComparing(MapFunction::type)
            .thenComparing(MapFunction::name))
            .forEach(System.out::println);