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Nextflow hackathon 2017 projects

This repository lists the project ideas and the material used during the hackathon organised in the context of the Nextflow workshop that will take on 14-15 September 2017 in Barcelona.

Location

PRBB building, Charles Darwin room, ground floor (you will need an ID card to enter in the building).

Schedule

The workshop schedule is available here.

Event chat

We will use the following Gitter channel during the workshop activities. Feel free to register and use it for any question about logistic, problems, doubts during the hackathon, etc.

Hackathon

Project ideas are listed in the issues page.

Feel free to join one of the listed project or create a new one if you have a specific idea on which you would like to work.

We also encourage you to create a separate GitHub repository to keep track your project files and link it to the relative project idea in the above link. This will allow us to share and follow-up the hackathon achievement.

Tutorial

The Nextflow tutorial is available at this reporitory.

Tutorial participants are encouraged to implement the Variant Calling pipeline described in this tutorial in the second day.

Slides

You can find below the link to the speaker slides:

• Frédéric Lemoine - Large scale benchmarking of Phylogenetic bootstrap methods
• Hugues Fontenelle - Medical Genetics at Oslo University Hospital
• Jordi Rambla - Standardizing life sciences datasets to improve reproducibility in the EOSC
• Luca Cozzuto - From zero to Nextflow
• Matthieu Foll - Computational workflows for omics analyses at the IARC
• Paolo Di Tommaso - Lessons learned and new challenges
• Phil Ewels - Standardising Swedish genomics analyses using Nextflow
• Scott Hazelhurst - Building pipelines to support African bioinformatics
• Tim Dudgeon - Nextflow for chemistry - crossing the divide