Awesome

WARNING: This is an experimental version that includes StxTyper

Currently it will need to be compiled from source to install.

Downloading and compiling AMRFinderPlus with StxTyper

git clone https://github.com/ncbi/amr.git
cd amr
git checkout stxtype
git submodule update --init
make
./amrfinder -u
make test

NCBI Antimicrobial Resistance Gene Finder (AMRFinderPlus)

This software and the accompanying database are designed to find acquired antimicrobial resistance genes and point mutations in protein and/or assembled nucleotide sequences. We have also added "plus" stress, heat, and biocide resistance and virulence factors for some organisms.

See the wiki for documentation

Citing AMRFinderPlus

Please subscribe to our announce list for announcements of database and software updates.

Licenses

PUBLIC DOMAIN NOTICE

National Center for Biotechnology Information

This software/database is a "United States Government Work" under the terms of the United States Copyright Act. It was written as part of the authors' official duties as a United States Government employee and thus cannot be copyrighted. This software/database is freely available to the public for use. The National Library of Medicine and the U.S. Government have not placed any restriction on its use or reproduction.

Although all reasonable efforts have been taken to ensure the accuracy and reliability of the software and data, the NLM and the U.S. Government do not and cannot warrant the performance or results that may be obtained by using this software or data. The NLM and the U.S. Government disclaim all warranties, express or implied, including warranties of performance, merchantability or fitness for any particular purpose.

In any work or product derived from this material, proper attribution of the authors as the source of the software or data should be made, using the following citation:

Feldgarden M, Brover V, Gonzalez-Escalona N, Frye JG, Haendiges J, Haft DH, Hoffmann M, Pettengill JB, Prasad AB, Tillman GE, Tyson GH, Klimke W. AMRFinderPlus and the Reference Gene Catalog facilitate examination of the genomic links among antimicrobial resistance, stress response, and virulence. Sci Rep. 2021 Jun 16;11(1):12728. doi: 10.1038/s41598-021-91456-0. PMID: 34135355; PMCID: PMC8208984.