Awesome

Mybiotools

Python scripts for biologists

This is a project for personal use at the very begining. It is not a programme for covering every pieces of biology. The main purpose is just to make my routine work a bit easier and more streamlined. If you are looking for a advanced python scripts suit for biology, please give BioPython a shot.

The main functionalities of the scripts are listed below:

1. process and analyze DNA or protein sequences - remove '\n','\t', '\r' and numbers that are in the DNA or protein sequences - get reversed complementory sequence - read a local fasta file - read a fastq file and plot quality scores - design primers - slice the sequence to pieces of length of interest - translate DNA or mRNA sequence to protein - find recognition sites of restriction enzymes - look up genetic codons - ...

2. Search NCBI for the information about a gene, such as mRNA variants, mRNA sequences, CDS

3. Search Uniprot for the information about a protein, such as AA sequence

4. find and apply popular online tools in one place, such as PSIPRED

Please find Mybiotools demo.ipynb to explore how it works.

You are welcome to throw any comments or suggestion here. OR contact me @Mingzhang_Yang

At last, please feel free to fork it for your personalized use.