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DeepBugs: Deep Learning to Find Bugs

DeepBugs is a framework for learning name-based bug detectors from an existing code corpus. See our OOPSLA'18 paper for a detailed description.

Quick Start

A quick and easy way to play with a simplified version of DeepBugs is a Jupyter notebook, which you can run on Google's Colaboratory. To use the full DeepBugs tool, read on.

Overview

• All commands are called from the main directory.
• Python code (most of the implementation) and JavaScript code (for extracting data from .js files) are in the /python and /javascript directories.
• All data to learn from, e.g., .js files are expected to be in the /data directory.
• All data that is generated, e.g., intermediate representations, are written into the main directory. It is recommended to move them into separate directories.
• All generated data files have a timestamp as part of the file name. Below, all files are used with *. When running commands multiple times, make sure to use the most recent files.

Requirements

• Node.js
• npm modules (install with npm install module_name): acorn, estraverse, walk-sync
• Python 3
• Python packages: keras, scipy, numpy, sklearn

JavaScript Corpus

• The full corpus can be downloaded here and is expected to be stored in data/js/programs_all. It consists of 100.000 training files, listed in data/js/programs_training.txt, and 50.000 files for validation, listed in data/js/programs_eval.txt.
• This repository contains only a very small subset of the corpus. It is stored in data/js/programs_50. Training and validation files for the small corpus are listed in data/js/programs_50_training.txt and data/js/programs_50_eval.txt.

Learning a Bug Detector

Creating a bug detector consists of two main steps:

1. Extract positive (i.e., likely correct) and negative (i.e., likely buggy) training examples from code.
2. Train a classifier to distinguish correct from incorrect code examples.

Each bug detector addresses a particular bug pattern, e.g.:

• The SwappedArgs bug detector looks for accidentally swapped arguments of a function call, e.g., calling setPoint(y,x) instead of setPoint(x,y).
• The BinOperator bug detector looks for incorrect operators in binary operations, e.g., i <= len instead of i < len.
• The IncorrectBinaryOperand bug detector looks for incorrect operands in binary operations, e.g., height - x instead of height - y.

Step 1: Extract positive and negative training examples

node javascript/extractFromJS.js calls --parallel 4 data/js/programs_50_training.txt data/js/programs_50

• The --parallel argument sets the number of processes to run.
• programs_50_training.txt contains files to include (one file per line). To extract data for validation, run the command with data/js/programs_50_eval.txt.
• The last argument is a directory that gets recursively scanned for .js files, considering only files listed in the file provided as the second argument.
• The command produces calls_*.json files, which is data suitable for the SwappedArgs bug detector. For the other bug two detectors, replace calls with binOps in the above command.

Step 2: Train a classifier to identify bugs

A) Train and validate the classifier python3 python/BugLearnAndValidate.py --pattern SwappedArgs --token_emb token_to_vector.json --type_emb type_to_vector.json --node_emb node_type_to_vector.json --training_data calls_xx*.json --validation_data calls_yy*.json

• The first argument selects the bug pattern.
• The next three arguments are vector representations for tokens (here: identifiers and literals), for types, and for AST node types. These files are provided in the repository.
• The remaining arguments are two lists of .json files. They contain the training and validation data extracted in Step 1.
• After learning the bug detector, the command measures accurracy and recall w.r.t. seeded bugs and writes a list of potential bugs in the unmodified validation code (see poss_anomalies.txt).

B) Train a classifier for later use python3 python/BugLearn.py --pattern SwappedArgs --token_emb token_to_vector.json --type_emb type_to_vector.json --node_emb node_type_to_vector.json --training_data calls_xx*.json

• Optionally, pass --out some/dir to set the output directory for the trained model.

Note that learning a bug detector from the very small corpus of 50 programs will yield a classifier with low accuracy that is unlikely to be useful. To leverage the full power of DeepBugs, you'll need a larger code corpus, e.g., the JS150 corpus mentioned above.

Finding Bugs

Finding bugs in one or more source files consists of these two steps:

1. Extract code pieces
2. Use a trained classifier to identify bugs

Step 1: Extract code pieces

node javascript/extractFromJS.js calls --files <list of files>

• <list of files> contains one or more files to be examined. Code pieces can be extracted from any javascript file (.js) given with path specification relative to the main directory.
• The command produces calls_*.json files, which is data suitable for the SwappedArgs bug detector. For the other bug two detectors, replace calls with binOps in the above command.

Step 2: Use a trained classifier to identify bugs

python3 python/BugFind.py --pattern SwappedArgs --threshold 0.95 --model some/dir --token_emb token_to_vector.json --type_emb type_to_vector.json --node_emb node_type_to_vector.json --testing_data calls_xx*.json

• The first argument selects the bug pattern.
• 0.95 is the threshold for reporting bugs; higher means fewer warnings of higher certainty.
• --model sets the directory to load a trained model from.
• The next three arguments are vector representations for tokens (here: identifiers and literals), for types, and for AST node types. These files are provided in the repository.
• The remaining argument is a list of .json files. They contain the data extracted in Step 1.
• The command examines every code piece and writes a list of potential bugs with its probability of being incorrect

Embeddings for Identifiers

The above bug detectors rely on a vector representation for identifier names and literals. To use our framework, the easiest is to use the shipped token_to_vector.json file. Alternatively, you can learn the embeddings via Word2Vec as follows:

1. Extract identifiers and tokens:

node javascript/extractFromJS.js tokens --parallel 4 data/js/programs_50_training.txt data/js/programs_50

• The command produces tokens_*.json files.

2. Encode identifiers and literals with context into arrays of numbers (for faster reading during learning):

python3 python/TokensToTopTokens.py tokens_*.json

• The arguments are the just created files.
• The command produces encoded_tokens_*.json files and a file token_to_number_*.json that assigns a number to each identifier and literal.

3. Learn embeddings for identifiers and literals:

python3 python/EmbeddingLearnerWord2Vec.py token_to_number_*.json encoded_tokens_*.json

• The arguments are the just created files.
• The command produces a file token_to_vector_*.json.