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CHM13-issues

CHM13 human reference genome issue tracking

For any downstream analysis, please use the following files:

Releases

Issues.bed file format

LabelDescriptionR,G,BColor
LowLow coverage204,0,0red
Low_QualLow coverage from lower consensus quality204,0,0red
Error_KmerK-mers identified as errors from the Illumina-HiFi hybrid 21-mers0,0,0black
CollapseApproximate region conatining sequence collapse204,0,0red
Chimeric_HapChimeric consensus of two haplotypes204,0,0red

Methods

Brief descriptions are provided for

More details for the polishing and evaluation methods applied on CHM13 is available in T2T-Polish. For the methods used for polishing a nd evaluating the Y, see this preprint for more details.

Citation

Please cite the papers below if any of the materials posted on this github are used: