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Lutorpy

Lutorpy is a libray built for deep learning with torch in python, by a two-way bridge between Python/Numpy and Lua/Torch, you can use any Torch modules(nn, rnn etc.) in python, and easily convert variables(array and tensor) between torch and numpy.

Features

• import any lua/torch module to python and use it like python moduels
• use lua objects directly in python, conversion are done automatically
• create torch tensor from numpy array with torch.fromNumpyArray(arr)
• use tensor.asNumpyarray() to convert a torch tensor to a numpy array with memory sharing
• support zero-base indexing (lua uses 1-based indexing)
• automatic prepending self to function by "._" syntax, easily convert ":" operator in lua to python

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Convert from Lua to Python/Lutorpy

-- lua code                             # python code (with lutorpy)
--                                      import lutorpy as lua
require "nn"                    ===>    require("nn")
model = nn.Sequential()         ===>    model = nn.Sequential()
-- use ":" to access add        ===>    # use "._" to access add
model:add(nn.Linear(10, 3))     ===>    model._add(nn.Linear(10, 3))
--                                      import numpy as np
x = torch.Tensor(10):zero()     ===>    arr = np.zeros(10)
-- torch style(painful?)        ===>    # numpy style(elegent?) 
x:narrow(1, 2, 6):fill(1)       ===>    arr[1:7] = 1
--                                      # convert numpy array to a torch tensor
--                                      x = torch.fromNumpyArray(arr)
--                                      # or you can still use torch style
x:narrow(1, 7, 2):fill(2)       ===>    x._narrow(1, 7, 2)._fill(2)
-- 1-based index                ===>    # 0-based index
x[10] = 3                       ===>    x[9] = 3
y = model:forward(x)            ===>    y = model._forward(x)
--                                      # you can convert y to a numpy array
--                                      yArr = y.asNumpyArray()

Quick Start

basic usage

import lutorpy as lua
import numpy as np

## use require("MODULE") to import lua modules
require("nn")

## run lua code in python with minimal modification:  replace ":" to "._"
t = torch.DoubleTensor(10,3)
print(t._size()) # the corresponding lua version is t:size()

## or, you can use numpy array
xn = np.random.randn(100)
## convert the numpy array into torch tensor
xt = torch.fromNumpyArray(xn)

## convert torch tensor to numpy array
### Note: the underlying object are sharing the same memory, so the conversion is instant
arr = xt.asNumpyArray()
print(arr.shape)

example 1: multi-layer perception

## minimal example of multi-layer perception(without training code)
mlp = nn.Sequential()
mlp._add(nn.Linear(100, 30))
mlp._add(nn.Tanh())
mlp._add(nn.Linear(30, 10))

## generate a numpy array and convert it to torch tensor
xn = np.random.randn(100)
xt = torch.fromNumpyArray(xn)
## process with the neural network
yt = mlp._forward(xt)
print(yt)

## or for example, you can plot your result with matplotlib
yn = yt.asNumpyArray()
import matplotlib.pyplot as plt
plt.plot(yn)

example 2: load pre-trained model with torch and apply it

import numpy as np
import lutorpy as lua

# load your torch file(for example xx.t7 containing the model and weights)
model = torch.load('PATH TO YOUR MODEL FILE')

# generate your input data with numpy
arr = np.random.randn(100)

# convert your numpy array into torch tensor
x = torch.fromNumpyArray(arr)

# apply model forward method with "._" syntax(which is equivalent to ":" in lua)
yt = model._forward(x)

# convert to numpy array
yn = yt.asNumpyArray()

You can also have a look at the step-by-step tutorial and more complete example.

Installation

You need to install torch before you start (only LuaJIT engine is supported for now)

# in a terminal, run the commands WITHOUT sudo
git clone https://github.com/torch/distro.git ~/torch --recursive
cd ~/torch
./clean.sh
bash install-deps
./install.sh

Then, you can use luarocks to install torch/lua modules

luarocks install nn

If you don't have numpy installed, install it by pip

sudo pip install numpy

Now, we are ready to install lutorpy, just use pip to install the released version:

sudo pip install lutorpy

Or, install from git repository:

git clone https://github.com/imodpasteur/lutorpy.git
cd lutorpy
sudo python setup.py install

note that for now, lutorpy is only tested on ubuntu, please report issue if you encountered error.

if the setup script failed to detect your torch, it may related to: issue #38

Step-by-step tutorial

import lutorpy

import lutorpy as lua
# setup runtime and use zero-based index(optional, enabled by default)
lua.LuaRuntime(zero_based_index=True)

### note: zero-based index will only work getter operator such as "t[0]", for torch function like narrow, you still need 1-based indexing.

hello world

lua.execute(' greeting = "hello world" ')
print(greeting)

Alternatively you could also switch back to one-based indexing

Note that if you do this, all the following code should change acorrdingly.

lua.LuaRuntime(zero_based_index=False)

execute lua code

a = lua.eval(' {11, 22} ') # define a lua table with two elements
print(a[0])

use torch

require("torch")
z = torch.Tensor(4,5,6,2)
print(torch.isTensor(z))
s = torch.LongStorage(6)
print(torch.type(s))

convert torch tensor to numpy array

require('torch')
t = torch.randn(10,10)
print(t)
arr = t.asNumpyArray()
print(arr)

convert numpy array to torch tensor

Note: both torch tensor and cuda tensor are supported.

arr = np.random.randn(100)
print(arr)
t = torch.fromNumpyArray(arr)
print(t)

convert to/from cudaTensor

require('cutorch')
cudat = torch.CudaTensor(10,10)
#convert cudaTensor to numpy array
arr = cudat.asNumpyArray()
print(arr)

arr = np.random.randn(100)
print(arr)
t = torch.fromNumpyArray(arr)
cudat = t._cuda()
print(cudat)

load image and use nn module

require("image")
img_rgb = image.lena()
print(img_rgb.size(img_rgb))
img = image.rgb2y(img_rgb)
print(img.size(img))

# use SpatialConvolution from nn to process the image
require("nn")
n = nn.SpatialConvolution(1,16,12,12)
res = n.forward(n, img)
print(res.size(res))

build a simple model

mlp = nn.Sequential()
module = nn.Linear(10, 5)
mlp.add(mlp, module)
print(module.weight)
print(module.bias)
print(module.gradWeight)
print(module.gradBias)
x = torch.Tensor(10) #10 inputs
# pass self to the function
y = mlp.forward(mlp, x)
print(y)

prepending 'self' as the first argument automatically

In lua, we use syntax like 'mlp:add(module)' to use a function without pass self to the function. But in python, it's done by default, there are two ways to prepend 'self' to a lua function in lutorpy.

The first way is inline prepending by add '_' to before any function name, then it will try to return a prepended version of the function:

mlp = nn.Sequential()
module = nn.Linear(10, 5)

# lua style
mlp.add(mlp, module)

# inline prepending
mlp._add(module) # equaliant to mlp:add(module) in lua

build another model and training it

Train a model to perform XOR operation (see this torch tutorial).

require("nn")
mlp = nn.Sequential()
mlp._add(nn.Linear(2, 20)) # 2 input nodes, 20 hidden nodes
mlp._add(nn.Tanh())
mlp._add(nn.Linear(20, 1)) # 1 output nodes
criterion = nn.MSECriterion() 
for i in range(2500):
    # random sample
    input= torch.randn(2)    # normally distributed example in 2d
    output= torch.Tensor(1)
    if input[0]*input[1] > 0:  # calculate label for XOR function
        output[0] = -1 # output[0] = -1
    else:
        output[0] = 1 # output[0] = 1
    # feed it to the neural network and the criterion
    criterion._forward(mlp._forward(input), output)
    # train over this example in 3 steps
    # (1) zero the accumulation of the gradients
    mlp._zeroGradParameters()
    # (2) accumulate gradients
    mlp._backward(input, criterion.backward(criterion, mlp.output, output))
    # (3) update parameters with a 0.01 learning rate
    mlp._updateParameters(0.01)

Train a model with nn trainer.

require("nn")
mlp = nn.Sequential()
mlp._add(nn.Linear(2, 20)) # 2 input nodes, 20 hidden nodes
mlp._add(nn.Tanh())
mlp._add(nn.Linear(20, 1)) # 1 output nodes

class DataSet():
    def __init__(self):
        self.data = []
        for i in range(2500):
            # random sample
            input= torch.randn(2)    # normally distributed example in 2d
            output= torch.Tensor(1)
            if input[0]*input[1] > 0:  # calculate label for XOR function
                output[0] = -1 # output[0] = -1
            else:
                output[0] = 1 # output[0] = 1
            # here we need to add one empty column because lua index will start at 1
            self.data.append((i, input,output))
    def __getitem__(self, key):
        if key == 'size':
            return lambda x: len(self.data)
        return self.data[key-1]

dataset = DataSet()
criterion = nn.MSECriterion()  
trainer = nn.StochasticGradient(mlp, criterion)
trainer.learningRate = 0.01
trainer._train(dataset)

test the model

x = torch.Tensor(2)
x[0] =  0.5; x[1] =  0.5; print(mlp._forward(x))
x[0] =  0.5; x[1] = -0.5; print(mlp._forward(x))
x[0] = -0.5; x[1] =  0.5; print(mlp._forward(x))
x[0] = -0.5; x[1] = -0.5; print(mlp._forward(x))

Details of implementation

• For applying tensor.asNumpyArray() method to a torch tensor, if the tensor is contiguous, the memory will be shared between numpy array and torch tensor, if the tensor is not contiguous, a contiguous clone of the tensor will be used, so the created numpy array won't share memory with the old tensor.

• For torch.fromNumpyArray(), there will be no memory sharing between the numpy array and the tenosr created.

More details about using lua in python

Lutorpy is built upon lupa, there are more features provided by lupa could be also useful, please check it out.

Notes

• python2 and python3 are both supported
• unfortunately, OSX is not supported so far

Bug tracker

Have a bug? Please create an issue here on GitHub at https://github.com/imodpasteur/lutorpy/issues.

Support lutorpy project

Like lutorpy project? It solved your problem? Let us know by giving lutorpy project a star, so we know how many people are interested, thank you.

Acknowledge

This is a project inspired by lunatic-python and lupa, and it's based on lupa.