Awesome

Informatics for RNA-seq: A web resource for analysis on the cloud

THIS VERSION OF THE RNA-SEQ COURSE IS DEPRECATED. FOR CURRENT VERSION PLEASE VISIT: https://rnabio.org/

An educational tutorial and working demonstration pipeline for RNA-seq analysis including an introduction to: cloud computing, next generation sequence file formats, reference genomes, gene annotation, expression analysis, differential expression analysis, alternative splicing analysis, data visualization, and interpretation.

This repository is used to store code and certain raw materials for a detailed RNA-seq tutorial. To actually complete this tutorial, go to the <a href="https://github.com/griffithlab/rnaseq_tutorial/wiki">RNA-seq tutorial wiki</a>.

Citation: Malachi Griffith*, Jason R. Walker, Nicholas C. Spies, Benjamin J. Ainscough, Obi L. Griffith*. 2015. <a href="http://dx.doi.org/10.1371/journal.pcbi.1004393">Informatics for RNA-seq: A web resource for analysis on the cloud</a>. PLoS Comp Biol. 11(8):e1004393.

*To whom correspondence should be addressed: E-mail: mgriffit[AT]genome.wustl.edu, ogriffit[AT]genome.wustl.edu

Note: An archived version of this tutorial exists <a href="https://github.com/griffithlab/rnaseq_tutorial_v1">here</a>. This version is maintained for consistency with the published materials (<a href="http://dx.doi.org/10.1371/journal.pcbi.1004393">Griffith et al. 2015. PLoS Comp Biol.</a>) and for past students wishing to review covered material. However, we strongly suggest that you continue with the current version of the tutorial below.

Want to contribute to the RNA-seq Wiki?

Fork it and send a pull request.

Tutorial Table of Contents