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<img src="https://github.com/dimenwarper/scimitar/raw/master/logo.png" width="300"> ## Single Cell Inference of MorphIng Trajectories and their Associated Regulation module

SCIMITAR provides a variety of tools to analyze trajectory maps of single-cell measurements.

With SCIMITAR you can:

To install SCIMITAR, follow the steps below:

  1. Install the pyroconductor package

  2. Do the usual python setup.py install

  3. Check out the jupyter notebooks tutorials in the tutorials directory

  4. Questions, concerns, or suggestions? Thanks! Open up a ticket or pm @dimenwarper (Pablo Cordero)

If you use SCIMITAR please cite the paper ;)

Also, take a look at the talk slides.