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ARCHIVED REPOSITORY

This repository is no longer maintained.

The latest lineages for SARS-CoV-2 can be found at pango-designation and information on these lineages is hosted at cov-lineages.org.

The latest pangoLEARN input can be found at the pangoLEARN repository which has replaced the inference engine in the software tool pangolin.

A dynamic nomenclature proposal for SARS-CoV-2 to assist genomic epidemiology

Andrew Rambaut, Edward C. Holmes, Verity Hill, Áine O’Toole, JT McCrone, Chris Ruis, Louis du Plessis, Oliver G. Pybus

<img src="https://github.com/hCoV-2019/pangolin/blob/master/docs/logo.png" width="100">Phylogenetic Assignment of Named Global Outbreak LINeages