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Model C3 Photosynthesis
Description
photosynthesis is an R package with modeling tools for C3 photosynthesis, as well as analytical tools for curve-fitting plant ecophysiology responses. It uses the R package units to ensure that parameters are properly specified and transformed before calculations.
Get photosynthesis
From CRAN
install.packages("photosynthesis")
or from GitHub
install.packages("remotes")
remotes::install_github("cdmuir/photosynthesis")
And load photosynthesis
library("photosynthesis")
Vignettes
See the following vignettes for examples of what photosynthesis can do:
- Introduction to the photosynthesis package
- Modeling C3 Photosynthesis: recommendations for common scenarios
- Fitting light response curves
- Fitting CO2 response curves
- Fitting temperature response curves
- Fitting stomatal conductance models
- Fitting light respiration
- Fitting mesophyll conductance
- Fitting pressure-volume curves
- Fitting hydraulic vulnerability curves
- Sensitivity Analysis
Contributors
- Joseph Stinziano
- Chris Muir
- Cassaundra Roback
- Demi Sargent
- Bridget Murphy
- Patrick Hudson
Comments and contributions
We welcome comments, criticisms, and especially contributions! GitHub issues are the preferred way to report bugs, ask questions, or request new features. You can submit issues here:
https://github.com/cdmuir/photosynthesis/issues
Meta
- Please report any issues or bugs.
- License: MIT
- Get citation information for photosynthesis in R doing
citation(package = 'photosynthesis') - Please note that this project is released with a Contributor Code of Conduct. By participating in this project you agree to abide by its terms.