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sonLib

sonLib is a compact C/Python library for sequence analysis in bioinformatics.

(c) 2006 - 2012 The Author(s). See <code>LICENSE.txt</code> for details.

Author

Benedict Paten

Description

For basic data-structures in C it contains:

• array lists (automatically resizing)
• hashes
• sets (backed by hashes)
• sorted sets (backed by an AVL tree)
• containers (for putting primitives into the above data-structures)
• better string functions
• simple exception mechanism
• logging functions

For bioinformatic data-structures it contains (or will contain):

• Fasta I/O functions
• MAF I/O functions
• Newick tree I/O functions

For more details see the Full README in doc/README