Awesome
vt
A tool set for short variant discovery in genetic sequence data.
Visit http://genome.sph.umich.edu/wiki/vt for instructions.
vt uses htslib<sup>1</sup>, tclap<sup>2</sup>, Rmath<sup>3</sup>, pcre2<sup>4</sup> and libsvm<sup>5</sup>.
How to cite
vt normalize : <br> Adrian Tan, Gonçalo R. Abecasis and Hyun Min Kang. Unified Representation of Genetic Variants. Bioinformatics (2015) 31(13): 2202-2204
Reference
- https://github.com/samtools/htslib
- http://tclap.sourceforge.net
- https://github.com/atks/Rmath
- http://sourceforge.net/projects/pcre
- Chih-Chung Chang and Chih-Jen Lin, LIBSVM : a library for support vector machines. ACM Transactions on Intelligent Systems and Technology, 2:27:1--27:27, 2011. https://github.com/cjlin1/libsvm