Awesome

SEIR_COVID19_Dev

(Developer's version) SEIR model for COVID-19 infection, including different clinical trajectories of infection, interventions to reduce transmission, and comparisons to healthcare capacity.

The code that produces the interface and functionality of the Shiny App is in files

• server.R
• ui.R

Files used in the explanatory sections of the app are

• SEIR.Rmd
• www/Parameters.nb.html

All the functions that actually run the model and process the parameters are in the code/functions.R file

If you want to run the code to produce the same outputs as Shiny but without dealing with the app structure, you can use the R scripts

• runSpread.R
• runInterventions.R
• runCapacity.R

When trying out new model structures or plots, it is much easier to work with scripts instead of directly with the app. If you're adding a new feature, please add it via the functions.R file and a new script, so other can test it easily. Once troubleshooting is done, we can figure out how to integrated with the app