Awesome
SCENIC+ single-cell eGRN inference
SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.
[!NOTE]
Updates:August 30th 2024: Perturbation simulation got updated, please find tutorial here
[!TIP] We did a live webinar on using the SCENIC+ workflow. You can rewatch it on YouTube
Documentation
Extensive documentation and tutorials are available at read the docs.
Installing
To install SCENIC+ (in a Linux environment):
We highly recommend to install SCENIC+ in a new conda environment.
$ conda create --name scenicplus python=3.11 -y
$ conda activate scenicplus
$ git clone https://github.com/aertslab/scenicplus
$ cd scenicplus
$ pip install .
Questions?
- If you have technical questions or problems, such as bug reports or ideas for new features, please open an issue under the issues tab.
- If you have questions about the interpretation of results or your analysis, please start a Discussion under the Discussions tab.