Awesome
Awesome Machine Learning in Biomedical(Healthcare) Imaging
🌈A list of awesome selected resources towards the application of machine learning in Biomedical/Healthcare Imaging, inspired by awesome-php.
If you also want to contribute to this list, feel free to send me a pull request or contact me🙌@XindiWu.
Table of Contents
Courses
Bioimage Analysis
Harvard: Bio-Image Analysis Course
Stanford: Introduction to Bioimaging
CMU: Bioimage Informatics
Caltech: Data Analysis in the Biological Sciences
Biomedical Image Analysis
University of Nebraska: Introduction to Biomedical Imaging and Image Analysis
Stanford: Computational Methods for Biomedical Image Analysis and Interpretation
Dartmouth College: Medical Image Visualization and Analysis
UCLA: Signal and Image Processing for Biomedicine
MIT: Biomedical Signal and Image Processing
UCSD: Introduction to biomedical imaging and sensing
ILLINOIS: Biomedical imaging
Medical image analysis
Johns Hopkins: Applied Medical Image Processing
UCB: Medical Imaging Signals and Systems
Brown University: Medical Image Analysis
MIT: Principles of Medical Imaging
Purdue: MEDICAL IMAGING DIAGNOSTIC TECHNOLOGIES
University of Michigan Ann Arbor: MEDICAL IMAGING SYSTEMS
University of Florida: Introduction to Biomedical Image Analysis and Imaging Informatics
CMU: Methods In (Bio)Medical Image Analysis
Conferences
2019 MICCAI: 22nd International Conference on Medical Image Computing and Computer Assisted Intervention
2019 AIME: Artificial Intelligence in Medicine
2019 AMIA: AMIA Symposium
2020 RECOMB: International Conference on Research in Computational Molecular Biology
2020 PSB: Pacific Symposium on Biocomputing
2020 ICHI: IEEE International Conference on Healthcare Informatics
2020 CMIMI: Conference on Machine Intelligence in Medical Imaging
2019 ISBI: The IEEE International Symposium on Biomedical Imaging
Journal Collections
BMC: Artificial intelligence in biomedical imaging
JAMA: Deep Learning and Artificial Intelligence in Health Care
PLOS: Machine Learning in Health and Biomedicine
Nature Medicine: Digital Medicine
IEEE: Journal of Biomedical and Health Informatics
Datasets
External Link Collections: https://github.com/beamandrew/medical-data
Kaggle: Medical Image
Kaggle: Biology Image
The Cancer Imaging Archive (TCIA)
Radiology (Ultrasound, Mammographs, X-Ray, CT, MRI, fMRI, etc.)
Center for Invivo Microscopy (CIVM), Embrionic and Neonatal Mouse (H&E, MR) user guide
Collaborative Informatics and Neuroimaging Suite (COINS)
Alzheimer’s Disease Neuroimaging Initiative (ADNI)
The Open Access Series of Imaging Studies (OASIS)
Breast Cancer Digital Repository
DDSM: Digital Database for Screening Mammography
The Mammographic Image Analysis Society (MIAS) mini-database
Mammography Image Databases 100 or more images of mammograms with ground truth
NLM HyperDoc Visible Human Project color, CAT and MRI image samples - over 30 images
Microscopy (Cell, Cytology, Biology, Protein, Molecular, Fluorescence, etc.)
BDGP images from the FlyExpress database
The UCSB Bio-Segmentation Benchmark dataset
BIICBU Biological Image Repository
Chinese Hamster Ovary cells (CHO) dataset
Locate Endogenus mouse sub-cellular organelles (END) databaset
2D HeLa dataset (HeLa) datgaset
1000 Functional Connectomes Project
The Cell Centered Database (CCDB)
The Encyclopedia of DNA Elements (ENCODE)
DRIVE: Digital Retinal Images for Vessel Extraction / Ground truth
Histology and Histopathology
The Histology Image Dataset (histologyDS)
The Cancer Genome Atlas (TCGA)
International Cancer Genome Consortium / Data portal
Stanford Tissue Microarray Database (TMA)
DPA’s Whole Slide Imaging Repository
ITK Analysis of Large Histology Datasets
Slide Library of Virtual pathology, University of Leeds
Tissue Acquisition and Banking Services (TABS) of the NYU Experimental Pathology Core Facilities
Tasks: (Link: https://paperswithcode.com/area/medical)
Medical Image Segmentation
EEG
Electrocardiography (ECG)
Drug Discovery
Cancer
Sleep Quality
Medical Image Registration
Disease Prediction
Mortality Prediction
Medical Image Generation
Protein Secondary Structure Prediction
Medical Diagnosis
Length-of-stay prediction
Seizure Detection
Skin
Histopathological Image Classification
Mitosis Detection
Computational Phenotyping
Epidemiology
Lung Disease Classification
Diabetic Retinopathy Detection
X-Ray
Medical Relation Extraction
Metal Artifact Reduction
Photoplethysmography (PPG)
Lung Nodule Classification
Pneumonia Detection
Surgical Skills Evaluation
Readmission Prediction
Automatic Sleep Stage Classification
Eeg Decoding
Skull Stripping
Participant Intervention Comparison Outcome Extraction
Patient Outcomes
Medical Report Generation
Knee Osteoarthritis Prediction
Multi-Label Classification Of Biomedical Texts
breast density classification
Medical Super-Resolution
Molecule Interpretation
Mammogram
Cancer Metastasis Detection
Pain Intensity Regression
Electromyography (EMG)
Surgical Gesture Recognition
Protein Function Prediction
epilepsy prediction
Seizure prediction
White Matter Fiber Tractography
Single-cell modeling
Age-Related Macular Degeneration Classification
Sequential Diagnosis
Ecg Risk Stratification
Diabetes Prediction
Magnetic Resonance Fingerprinting
Tomography
Atrial Fibrillation
Malaria Risk Exposure Prediction
Muscular Movement Recognition
Medical Code Prediction
Motion Correction In Multishot Mri
Chemical Reaction Prediction
Ultrasound
Competitions:
Grand Challenges in Biomedical Image Analysis
The Cancer Imaging Archive (TCIA) Public Access