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LineEX: Data Extraction from Scientific Line Charts

This repo contains code and models for the LineEX system, (link paper), which extracts data from scientific line charts. We adapt existing vision transformers and pose detection methods and showcase significant performance gains over existing SOTA baselines. We also propose a new loss function and present its effectiveness against existing loss functions.

The LineEX pipeline consists of three modular stages, which can be used independent from each other. They are :

Usage

Clone this repository:

git clone https://github.com/Shiva-sankaran/LineEX.git
cd LineEX

Install the dependencies:

conda env create -f environment.yml
conda activate LineEX

Download weights and data

Weights and data will be placed at the correct folders

Set corresponding DATA_flag(True/False) to download a particular data set.

chmod +x download.sh
./download.sh -T False -V False  -L True  # To download only the test data

UPDATE: Dataset moved to here.

UPDATE: Weights can be found here

Testing

Each of the modules can be used separately, or the entire pipeline can be called at once to extract the desired information. Output is stored in the corresponding directory

Overall

python pipeline.py --input_path = sample_input/

Keypoint detection

cd modules/KP_detection
python run.py

Chart element detection

cd modules/CE_detection
python run.py

Evaluation

Refer to the paper for more information about the metrics

Overall

Overall metrics is essentially the metric for grouping and legend mapping

cd modules/Grouping_legend_mapping
python eval.py

Keypoint detection

cd modules/KP_detection
python eval.py

Chart element detection

cd modules/CE_detection
python run.py

Training

Keypoint Extraction

cd modules/KP_detection
python -m torch.distributed.launch --nproc_per_node=3 --node_rank=0 train.py --vit_arch xcit_small_12_p16 --batch_size 42 --input_size 288 384 --hidden_dim 384 --vit_dim 384 --num_workers 24 --vit_weights https://dl.fbaipublicfiles.com/xcit/xcit_small_12_p16_384_dist.pth --alpha 0.99

Chart Element Detection and Text Extraction

cd modules/CE_detection
python -m torch.distributed.launch train.py --coco_path path_to_data

TBA

Need to change data paths

Citation

Shivasankaran, V. P., Muhammad Yusuf Hassan, and Mayank Singh. "LineEX: Data Extraction from Scientific Line Charts." 2023 IEEE/CVF Winter Conference on Applications of Computer Vision (WACV). IEEE, 2023.