Awesome
What is a meaningful representation of protein sequences?
This repository contains code to reproduce the results reported in the following preprint:
What is a meaningful representation of protein sequences? NS Detlefsen, S Hauberg, W Boomsma - arXiv preprint arXiv:2012.02679, 2020
<dl> <dt>Table 1, Table 2 and Figure 2</dt> <dd>See <a href="https://github.com/MachineLearningLifeScience/meaningful-protein-representations/tree/master/tape">tape</a> subdirectory, containing a fork of the original TAPE code with our modifications.</dd> <dt>Figure 3,4,5, and 8</dt> <dd><a href="https://github.com/MachineLearningLifeScience/meaningful-protein-representations/blob/master/distances.ipynb">distances.ipynb jupyter notebook</aa> (<a href="https://colab.research.google.com/github/MachineLearningLifeScience/meaningful-protein-representations/blob/master/distances.ipynb">launch in colab</a>)</dd> <dt>Figure 6 and 7</dt> <dd><a href="https://github.com/MachineLearningLifeScience/meaningful-protein-representations/blob/master/blat_class_A1A2_experiments.ipynb">blat_class_A1A2_experiments.ipynb jupyter notebook</aa> (<a href="https://colab.research.google.com/github/MachineLearningLifeScience/meaningful-protein-representations/blob/master/blat_class_A1A2_experiments.ipynb">launch in colab</a>)</dd>