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pyPESTO - Parameter EStimation TOolbox for python

<img src="https://raw.githubusercontent.com/ICB-DCM/pyPESTO/master/doc/logo/logo_wordmark.png" width="50%" alt="pyPESTO logo"/>

pyPESTO is a widely applicable and highly customizable toolbox for parameter estimation.

PyPI CI Coverage Documentation DOI

Feature overview

Feature overview of pyPESTO. Figure taken from the Bioinformatics publication.

pyPESTO features include:

Quick install

The simplest way to install pyPESTO is via pip:

pip3 install pypesto

More information is available here: https://pypesto.readthedocs.io/en/latest/install.html

Documentation

The documentation is hosted on readthedocs.io: https://pypesto.readthedocs.io

Examples

Multiple use cases are discussed in the documentation. In particular, there are jupyter notebooks in the doc/example directory.

Contributing

We are happy about any contributions. For more information on how to contribute to pyPESTO check out https://pypesto.readthedocs.io/en/latest/contribute.html

How to Cite

Citeable DOI for the latest pyPESTO release: DOI

When using pyPESTO in your project, please cite

When presenting work that employs pyPESTO, feel free to use one of the icons in doc/logo/:

<p align="center"> <img src="https://raw.githubusercontent.com/ICB-DCM/pyPESTO/main/doc/logo/logo.png" height="75" alt="pyPESTO Logo"> </p>

There is a list of publications using pyPESTO. If you used pyPESTO in your work, we are happy to include your project, please let us know via a GitHub issue.

References

pyPESTO supersedes PESTO a parameter estimation toolbox for MATLAB, whose development is discontinued.