Awesome
Name
Empty template for nextflow pipelines (short description)
Description
...
Dependencies
- This pipeline is based on nextflow. As we have several nextflow pipelines, we have centralized the common information in the IARC-nf repository. Please read it carefully as it contains essential information for the installation, basic usage and configuration of nextflow and our pipelines.
- External software:
- ...
- ...
You can avoid installing all the external software by only installing Docker. See the IARC-nf repository for more information.
Input
| Type | Description |
|---|---|
| input1 | ...... |
| input2 | ...... |
Specify the test files location
Parameters
-
Mandatory
| Name | Example value | Description |
|---|---|---|
| --param1 | xx | ...... |
| --param2 | xx | ...... |
-
Optional
| Name | Default value | Description |
|---|---|---|
| --param3 | xx | ...... |
| --param4 | xx | ...... |
-
Flags
Flags are special parameters without value.
| Name | Description |
|---|---|
| --help | Display help |
| --flag2 | .... |
Usage
...
Output
| Type | Description |
|---|---|
| output1 | ...... |
| output2 | ...... |
Detailed description (optional section)
...
Directed Acyclic Graph
Contributions
| Name | Description | |
|---|---|---|
| contrib1* | xx | Developer to contact for support (link to specific gitter chatroom) |
| contrib2 | xx | Developer |
| contrib3 | xx | Tester |