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readimc

<a href="#"><img alt="Python" src="https://img.shields.io/pypi/pyversions/readimc" /></a> <a href="https://github.com/BodenmillerGroup/readimc/actions/workflows/build.yml" alt="Build"><img alt="Build" src="https://img.shields.io/github/actions/workflow/status/BodenmillerGroup/readimc/build.yml?label=build" /></a> <a href="https://pypi.org/project/readimc" alt="PyPI"><img alt="PyPI" src="https://img.shields.io/pypi/v/readimc" /></a> <a href="#"><img alt="Coverage" src="https://img.shields.io/codecov/c/github/BodenmillerGroup/readimc" /></a> <a href="https://bodenmillergroup.github.io/readimc" alt="Documentation"><img alt="Documentation" src="https://img.shields.io/github/actions/workflow/status/BodenmillerGroup/readimc/docs.yml?label=docs" /></a> <a href="https://github.com/BodenmillerGroup/readimc/issues" alt="Issues"><img alt="Issues" src="https://img.shields.io/github/issues/BodenmillerGroup/readimc" /></a> <a href="https://github.com/BodenmillerGroup/readimc/pulls" alt="Pull requests"><img alt="Pull requests" src="https://img.shields.io/github/issues-pr/BodenmillerGroup/readimc" /></a> <a href="https://github.com/BodenmillerGroup/readimc/blob/main/LICENSE" alt="License"><img alt="License" src="https://img.shields.io/github/license/BodenmillerGroup/readimc" /></a>

Python package for reading imaging mass cytometry (IMC) files

Documentation is available at https://bodenmillergroup.github.io/readimc

Citation

Please cite the following paper when using readimc in your work:

Windhager, J., Zanotelli, V.R.T., Schulz, D. et al. An end-to-end workflow for multiplexed image processing and analysis. Nat Protoc (2023). https://doi.org/10.1038/s41596-023-00881-0

@article{Windhager2023,
    author = {Windhager, Jonas and Zanotelli, Vito R.T. and Schulz, Daniel and Meyer, Lasse and Daniel, Michelle and Bodenmiller, Bernd and Eling, Nils},
    title = {An end-to-end workflow for multiplexed image processing and analysis},
    year = {2023},
    doi = {10.1038/s41596-023-00881-0},
    URL = {https://www.nature.com/articles/s41596-023-00881-0},
    journal = {Nature Protocols}
}