Awesome
covidify <a href='https://ko-fi.com/M4M11RWBF' target='_blank'><img height='36' style='border:0px;height:30px;' src='https://cdn.ko-fi.com/cdn/kofi3.png?v=2' border='0' alt='Buy Me a Coffee at ko-fi.com' /></a>
<img src="./resources/default.png"/> <p align="center"> <a href="#features">Features</a> • <a href="#how-to-use">How To Use</a> • <a href="#install">Install</a> • <a href="#visualizations">Visualizations</a> • <a href="https://github.com/CSSEGISandData/COVID-19">Data Source</a> • <a href="#credits">Credits</a> • <a href="https://github.com/AaronWard/covidify/projects">To-Do List</a> </p> <hr>Features
Covidify downloads the latest covid-19 data for confirmed cases, deaths and recoveries.
- Creates a time series dataset
- Creates a daily stats dataset
- Forecast global and country confirmed cases
- Generate visualizations
- Filter by country
- List all countries affected
- Shows number of people currently infected
- Generates an excel report including all of the above
Install
pip install covidify
How to use
$ covidify
Usage: covidify [OPTIONS] COMMAND [ARGS]...
☣ COVIDIFY ☣
- use the most up-to-date data to generate reports of
confirmed cases, fatalities and recoveries.
Options:
--help Show this message and exit.
Commands:
list List all the countries that have confirmed cases.
run Generate reports for global cases or refine by country.
$ covidify run --help
Usage: covidify run [OPTIONS]
Options:
--output TEXT Folder to output data and reports [Default:
/Users/award40/Desktop/covidify-output/]
--source TEXT There are two datasources to choose from, Johns Hopkins
github repo or wikipedia -- options are JHU or wiki
respectively [Default: JHU]
--country TEXT Filter reports by a country
--top TEXT Top N infected countries for log plot. [Default: 10]
--forecast TEXT Number of days to forecast cumulative cases in the future.
[Default: 15]
--help Show this message and exit.
Example Commands:
# List all countries affected
covidify list --countries
# Will default to desktop folder for output and github for datasource
covidify run
# Specify output folder and source
covidify run --output=<PATH TO DESIRED OUTPUT FOLDER>
# Filter reports by country
covidify run --country="South Korea"
# Show top 20 infected countries on a logarithmic scale
covidify run --top=20
# Forecast cumulative cases in America for 14 days into the future
covidify run --country=America --forecast=14
<hr>
Visualizations
An excel spreadsheet is generated with a number of visualizations and statistics.
Logarithmic Plot
This plot shows the top N
infected countries on a logarithmic scale.
Forecasting
An ARIMA model is trained and used to forecast the cumulative cases for N
number of days
into the future (DISCLAIMER: the forecast is a ballpark figure, and should not be taken as gospel)
Accumulative Trend
This is an accumulative sum trendline for all the confirmed cases, deaths and recoveries.
Daily Trendline
This is a daily sum trendline for all the confirmed cases, deaths and recoveries.
Stacked Daily Confirmed Cases
This stacked bar chart shows a daily sum of people who are already confirmed (<i>red</i>) and the people who have been confirmed on that date (<i>blue</i>)
Daily Confirmed Cases
A count for new cases on a given date, does not take past confirmations into account.
Daily Deaths
A count for deaths on a given date, does not take past deaths into account.
Daily Recoveries
A count for new recoveries on a given date, does not take past recoveries into account.
Currently Infected
A count for all the people who are currently infected for a given date.
<hr>Credits
- Written by me (Aaron Ward - https://www.linkedin.com/in/aaronjward/)
- A special thank you to the JHU CSSE team for maintaining the data
- Also a special thank you to @ajaymaity for bug fixes 🎉